annotate scripts/statistics/distributions/kolmogorov_smirnov_cdf.m @ 20641:c3c052b9192a

Improve performance and error reporting of betainv, gaminv (bug #34363). * betainv.m: Replace for loop with do-until loop. Shorten max loop cycles to 40, rather than 10,000. Issue warning if algorithm fails. * gaminv.m: Replace for loop with do-until loop. Shorten max loop cycles to 40, rather than 100. Issue warning if algorithm fails.
author Rik <rik@octave.org>
date Sun, 11 Oct 2015 16:55:17 -0700
parents d9341b422488
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
14138
72c96de7a403 maint: update copyright notices for 2012
John W. Eaton <jwe@octave.org>
parents: 13171
diff changeset
1 ## Copyright (C) 2012 Rik Wehbring
19731
4197fc428c7d maint: Update copyright notices for 2015.
John W. Eaton <jwe@octave.org>
parents: 19627
diff changeset
2 ## Copyright (C) 1995-2015 Kurt Hornik
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
3 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3457
diff changeset
4 ## This file is part of Octave.
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3457
diff changeset
5 ##
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3457
diff changeset
6 ## Octave is free software; you can redistribute it and/or modify it
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3457
diff changeset
7 ## under the terms of the GNU General Public License as published by
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6754
diff changeset
8 ## the Free Software Foundation; either version 3 of the License, or (at
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6754
diff changeset
9 ## your option) any later version.
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
10 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3457
diff changeset
11 ## Octave is distributed in the hope that it will be useful, but
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
12 ## WITHOUT ANY WARRANTY; without even the implied warranty of
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
13 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
14 ## General Public License for more details.
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
15 ##
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
16 ## You should have received a copy of the GNU General Public License
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6754
diff changeset
17 ## along with Octave; see the file COPYING. If not, see
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6754
diff changeset
18 ## <http://www.gnu.org/licenses/>.
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
19
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
20 ## -*- texinfo -*-
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
21 ## @deftypefn {Function File} {} kolmogorov_smirnov_cdf (@var{x}, @var{tol})
19627
446c46af4b42 strip trailing whitespace from most source files
John W. Eaton <jwe@octave.org>
parents: 17744
diff changeset
22 ## Return the cumulative distribution function (CDF) at @var{x} of the
20209
d9341b422488 doc: Update more docstrings to have one sentence summary as first line.
Rik <rik@octave.org>
parents: 19867
diff changeset
23 ## Kolmogorov-Smirnov distribution.
d9341b422488 doc: Update more docstrings to have one sentence summary as first line.
Rik <rik@octave.org>
parents: 19867
diff changeset
24 ##
d9341b422488 doc: Update more docstrings to have one sentence summary as first line.
Rik <rik@octave.org>
parents: 19867
diff changeset
25 ## This is defined as
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
26 ## @tex
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
27 ## $$ Q(x) = \sum_{k=-\infty}^\infty (-1)^k \exp (-2 k^2 x^2) $$
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
28 ## @end tex
8517
81d6ab3ac93c Allow documentation tobe built for other formats than tex and info
sh@sh-laptop
parents: 7795
diff changeset
29 ## @ifnottex
10821
693e22af08ae Grammarcheck documentation of m-files
Rik <octave@nomad.inbox5.com>
parents: 10793
diff changeset
30 ##
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
31 ## @example
9051
1bf0ce0930be Grammar check TexInfo in all .m files
Rik <rdrider0-list@yahoo.com>
parents: 8920
diff changeset
32 ## @group
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
33 ## Inf
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
34 ## Q(x) = SUM (-1)^k exp (-2 k^2 x^2)
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
35 ## k = -Inf
9051
1bf0ce0930be Grammar check TexInfo in all .m files
Rik <rdrider0-list@yahoo.com>
parents: 8920
diff changeset
36 ## @end group
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
37 ## @end example
10821
693e22af08ae Grammarcheck documentation of m-files
Rik <octave@nomad.inbox5.com>
parents: 10793
diff changeset
38 ##
8517
81d6ab3ac93c Allow documentation tobe built for other formats than tex and info
sh@sh-laptop
parents: 7795
diff changeset
39 ## @end ifnottex
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
40 ## @noindent
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
41 ## for @var{x} > 0.
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
42 ##
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
43 ## The optional parameter @var{tol} specifies the precision up to which
10793
be55736a0783 Grammarcheck the documentation from m-files.
Rik <octave@nomad.inbox5.com>
parents: 10687
diff changeset
44 ## the series should be evaluated; the default is @var{tol} = @code{eps}.
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
45 ## @end deftypefn
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
46
5428
2a16423e4aa0 [project @ 2005-08-23 18:38:27 by jwe]
jwe
parents: 5307
diff changeset
47 ## Author: KH <Kurt.Hornik@wu-wien.ac.at>
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3426
diff changeset
48 ## Description: CDF of the Kolmogorov-Smirnov distribution
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
49
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
50 function cdf = kolmogorov_smirnov_cdf (x, tol)
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
51
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
52 if (nargin < 1 || nargin > 2)
6046
34f96dd5441b [project @ 2006-10-10 16:10:25 by jwe]
jwe
parents: 5428
diff changeset
53 print_usage ();
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
54 endif
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
55
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
56 if (nargin == 1)
7795
df9519e9990c Handle single precision eps values
David Bateman <dbateman@free.fr>
parents: 7017
diff changeset
57 if (isa (x, "single"))
df9519e9990c Handle single precision eps values
David Bateman <dbateman@free.fr>
parents: 7017
diff changeset
58 tol = eps ("single");
df9519e9990c Handle single precision eps values
David Bateman <dbateman@free.fr>
parents: 7017
diff changeset
59 else
df9519e9990c Handle single precision eps values
David Bateman <dbateman@free.fr>
parents: 7017
diff changeset
60 tol = eps;
df9519e9990c Handle single precision eps values
David Bateman <dbateman@free.fr>
parents: 7017
diff changeset
61 endif
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3191
diff changeset
62 else
10687
a8ce6bdecce5 Improve documentation strings.
Rik <octave@nomad.inbox5.com>
parents: 9211
diff changeset
63 if (! (isscalar (tol) && (tol > 0)))
11472
1740012184f9 Use uppercase for variable names in error() strings to match Info documentation. Only m-files done.
Rik <octave@nomad.inbox5.com>
parents: 10821
diff changeset
64 error ("kolmogorov_smirnov_cdf: TOL must be a positive scalar");
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
65 endif
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
66 endif
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
67
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
68 if (numel (x) == 0)
10687
a8ce6bdecce5 Improve documentation strings.
Rik <octave@nomad.inbox5.com>
parents: 9211
diff changeset
69 error ("kolmogorov_smirnov_cdf: X must not be empty");
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
70 endif
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
71
4859
265d566cc770 [project @ 2004-04-08 23:52:45 by jwe]
jwe
parents: 4030
diff changeset
72 cdf = zeros (size (x));
265d566cc770 [project @ 2004-04-08 23:52:45 by jwe]
jwe
parents: 4030
diff changeset
73
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
74 ind = find (x > 0);
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
75 if (length (ind) > 0)
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
76 if (columns (ind) < rows (ind))
4859
265d566cc770 [project @ 2004-04-08 23:52:45 by jwe]
jwe
parents: 4030
diff changeset
77 y = x(ind.');
265d566cc770 [project @ 2004-04-08 23:52:45 by jwe]
jwe
parents: 4030
diff changeset
78 else
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
79 y = x(ind);
4859
265d566cc770 [project @ 2004-04-08 23:52:45 by jwe]
jwe
parents: 4030
diff changeset
80 endif
3457
e031284eea27 [project @ 2000-01-19 08:49:56 by jwe]
jwe
parents: 3456
diff changeset
81 K = ceil (sqrt (- log (tol) / 2) / min (y));
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
82 k = (1:K)';
3457
e031284eea27 [project @ 2000-01-19 08:49:56 by jwe]
jwe
parents: 3456
diff changeset
83 A = exp (- 2 * k.^2 * y.^2);
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
84 odd = find (rem (k, 2) == 1);
3457
e031284eea27 [project @ 2000-01-19 08:49:56 by jwe]
jwe
parents: 3456
diff changeset
85 A(odd,:) = -A(odd,:);
3191
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
86 cdf(ind) = 1 + 2 * sum (A);
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
87 endif
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
88
e4f4b2d26ee9 [project @ 1998-10-23 05:43:59 by jwe]
jwe
parents:
diff changeset
89 endfunction
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
90
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
91
19867
9fc020886ae9 maint: Clean up m-files to follow Octave coding conventions.
Rik <rik@octave.org>
parents: 19731
diff changeset
92 ## Test input validation
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
93 %!error kolmogorov_smirnov_cdf ()
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
94 %!error kolmogorov_smirnov_cdf (1,2,3)
14363
f3d52523cde1 Use Octave coding conventions in all m-file %!test blocks
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
95 %!error kolmogorov_smirnov_cdf (1, ones (2))
13171
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
96 %!error kolmogorov_smirnov_cdf ([], 1)
19b9f17d22af Overhaul of statistical distribution functions
Rik <octave@nomad.inbox5.com>
parents: 11523
diff changeset
97