Mercurial > octave-nkf
annotate src/ls-hdf5.h @ 16088:b29b10fbb744 stable release-3-6-4
Version 3.6.4 released.
* configure.ac (AC_INIT): Version is now 3.6.4.
(OCTAVE_RELEASE_DATE): Now 2013-02-21.
| author | John W. Eaton <jwe@octave.org> |
|---|---|
| date | Thu, 21 Feb 2013 15:17:54 -0500 |
| parents | 72c96de7a403 |
| children |
| rev | line source |
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| 4634 | 1 /* |
| 2 | |
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3 Copyright (C) 2003-2012 John W. Eaton |
| 4634 | 4 |
| 5 This file is part of Octave. | |
| 6 | |
| 7 Octave is free software; you can redistribute it and/or modify it | |
| 8 under the terms of the GNU General Public License as published by the | |
| 7016 | 9 Free Software Foundation; either version 3 of the License, or (at your |
| 10 option) any later version. | |
| 4634 | 11 |
| 12 Octave is distributed in the hope that it will be useful, but WITHOUT | |
| 13 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or | |
| 14 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License | |
| 15 for more details. | |
| 16 | |
| 17 You should have received a copy of the GNU General Public License | |
| 7016 | 18 along with Octave; see the file COPYING. If not, see |
| 19 <http://www.gnu.org/licenses/>. | |
| 4634 | 20 |
| 21 */ | |
| 22 | |
| 23 #if !defined (octave_ls_hdf5_h) | |
| 24 #define octave_ls_hdf5_h 1 | |
| 25 | |
| 4695 | 26 #if defined (HAVE_HDF5) |
| 27 | |
| 8676 | 28 #include "oct-hdf5.h" |
| 29 | |
| 4634 | 30 // first, we need to define our own dummy stream subclass, since |
| 31 // HDF5 needs to do its own file i/o | |
| 32 | |
| 33 // hdf5_fstreambase is used for both input and output streams, modeled | |
| 34 // on the fstreambase class in <fstream.h> | |
| 35 | |
| 36 class hdf5_fstreambase : virtual public std::ios | |
| 37 { | |
| 38 public: | |
| 39 | |
| 40 // HDF5 uses an "id" to refer to an open file | |
| 41 hid_t file_id; | |
| 42 | |
| 43 // keep track of current item index in the file | |
| 44 int current_item; | |
| 45 | |
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46 hdf5_fstreambase () : file_id (-1), current_item () { } |
| 4634 | 47 |
| 6760 | 48 ~hdf5_fstreambase () { close (); } |
| 49 | |
| 4663 | 50 hdf5_fstreambase (const char *name, int mode, int /* prot */ = 0) |
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51 : file_id (-1), current_item (-1) |
| 4634 | 52 { |
| 5255 | 53 if (mode & std::ios::in) |
| 10313 | 54 file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT); |
| 5255 | 55 else if (mode & std::ios::out) |
| 10313 | 56 { |
| 57 if (mode & std::ios::app && H5Fis_hdf5 (name) > 0) | |
| 58 file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT); | |
| 59 else | |
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60 file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT, |
| 10313 | 61 H5P_DEFAULT); |
| 62 } | |
| 4634 | 63 if (file_id < 0) |
| 10313 | 64 std::ios::setstate (std::ios::badbit); |
| 4634 | 65 |
| 66 current_item = 0; | |
| 67 } | |
| 68 | |
| 69 void close () | |
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70 { |
| 4634 | 71 if (file_id >= 0) |
| 10313 | 72 { |
| 73 if (H5Fclose (file_id) < 0) | |
| 74 std::ios::setstate (std::ios::badbit); | |
| 75 file_id = -1; | |
| 76 } | |
| 4634 | 77 } |
| 78 | |
| 5728 | 79 void open (const char *name, int mode, int) |
| 4634 | 80 { |
| 81 clear (); | |
| 82 | |
| 5255 | 83 if (mode & std::ios::in) |
| 10313 | 84 file_id = H5Fopen (name, H5F_ACC_RDONLY, H5P_DEFAULT); |
| 5255 | 85 else if (mode & std::ios::out) |
| 10313 | 86 { |
| 87 if (mode & std::ios::app && H5Fis_hdf5 (name) > 0) | |
| 88 file_id = H5Fopen (name, H5F_ACC_RDWR, H5P_DEFAULT); | |
| 89 else | |
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90 file_id = H5Fcreate (name, H5F_ACC_TRUNC, H5P_DEFAULT, |
| 10313 | 91 H5P_DEFAULT); |
| 92 } | |
| 4634 | 93 if (file_id < 0) |
| 10313 | 94 std::ios::setstate (std::ios::badbit); |
| 4634 | 95 |
| 96 current_item = 0; | |
| 97 } | |
| 98 }; | |
| 99 | |
| 100 // input and output streams, subclassing istream and ostream | |
| 101 // so that we can pass them for stream parameters in the functions below. | |
| 102 | |
| 103 class hdf5_ifstream : public hdf5_fstreambase, public std::istream | |
| 104 { | |
| 105 public: | |
| 106 | |
| 107 hdf5_ifstream () : hdf5_fstreambase (), std::istream (0) { } | |
| 108 | |
| 5255 | 109 hdf5_ifstream (const char *name, int mode = std::ios::in|std::ios::binary, |
| 10313 | 110 int prot = 0) |
| 4634 | 111 : hdf5_fstreambase (name, mode, prot), std::istream (0) { } |
| 112 | |
| 5255 | 113 void open (const char *name, int mode = std::ios::in|std::ios::binary, |
| 10313 | 114 int prot = 0) |
| 4634 | 115 { hdf5_fstreambase::open (name, mode, prot); } |
| 116 }; | |
| 117 | |
| 118 class hdf5_ofstream : public hdf5_fstreambase, public std::ostream | |
| 119 { | |
| 120 public: | |
| 121 | |
| 122 hdf5_ofstream () : hdf5_fstreambase (), std::ostream (0) { } | |
| 123 | |
| 5255 | 124 hdf5_ofstream (const char *name, int mode = std::ios::out|std::ios::binary, |
| 10313 | 125 int prot = 0) |
| 4634 | 126 : hdf5_fstreambase (name, mode, prot), std::ostream (0) { } |
| 127 | |
| 5255 | 128 void open (const char *name, int mode = std::ios::out|std::ios::binary, |
| 10313 | 129 int prot = 0) |
| 4634 | 130 { hdf5_fstreambase::open (name, mode, prot); } |
| 131 }; | |
| 132 | |
| 4687 | 133 // Callback data structure for passing data to hdf5_read_next_data, below. |
| 134 | |
| 135 struct | |
| 136 hdf5_callback_data | |
| 137 { | |
| 138 hdf5_callback_data (void) | |
| 139 : name (), global (false), tc (), doc () { } | |
| 140 | |
| 141 // the following fields are set by hdf5_read_data on successful return: | |
| 142 | |
| 143 // the name of the variable | |
| 144 std::string name; | |
| 145 | |
| 146 // whether it is global | |
| 147 bool global; | |
| 148 | |
| 149 // the value of the variable, in Octave form | |
| 150 octave_value tc; | |
| 151 | |
| 152 // a documentation string (NULL if none) | |
| 153 std::string doc; | |
| 154 }; | |
| 155 | |
| 156 #if HAVE_HDF5_INT2FLOAT_CONVERSIONS | |
| 6693 | 157 extern OCTINTERP_API hid_t |
| 4687 | 158 save_type_to_hdf5 (save_type st) |
| 159 #endif | |
| 160 | |
| 6693 | 161 extern OCTINTERP_API hid_t |
| 4687 | 162 hdf5_make_complex_type (hid_t num_type); |
| 163 | |
| 6693 | 164 extern OCTINTERP_API bool |
| 4687 | 165 hdf5_types_compatible (hid_t t1, hid_t t2); |
| 166 | |
| 6693 | 167 extern OCTINTERP_API herr_t |
| 4687 | 168 hdf5_read_next_data (hid_t group_id, const char *name, void *dv); |
| 169 | |
| 6693 | 170 extern OCTINTERP_API bool |
| 4687 | 171 add_hdf5_data (hid_t loc_id, const octave_value& tc, |
| 10313 | 172 const std::string& name, const std::string& doc, |
| 173 bool mark_as_global, bool save_as_floats); | |
| 4687 | 174 |
| 6693 | 175 extern OCTINTERP_API int |
| 4805 | 176 save_hdf5_empty (hid_t loc_id, const char *name, const dim_vector d); |
| 177 | |
| 6693 | 178 extern OCTINTERP_API int |
| 4805 | 179 load_hdf5_empty (hid_t loc_id, const char *name, dim_vector &d); |
| 180 | |
| 6693 | 181 extern OCTINTERP_API std::string |
| 4687 | 182 read_hdf5_data (std::istream& is, const std::string& filename, bool& global, |
| 10313 | 183 octave_value& tc, std::string& doc); |
| 4634 | 184 |
| 6693 | 185 extern OCTINTERP_API bool |
| 4634 | 186 save_hdf5_data (std::ostream& os, const octave_value& tc, |
| 10313 | 187 const std::string& name, const std::string& doc, |
| 188 bool mark_as_global, bool save_as_floats); | |
| 4634 | 189 |
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190 extern OCTINTERP_API bool |
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191 hdf5_check_attr (hid_t loc_id, const char *attr_name); |
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192 |
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193 extern OCTINTERP_API bool |
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194 hdf5_get_scalar_attr (hid_t loc_id, hid_t type_id, const char *attr_name, |
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195 void *buf); |
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196 |
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197 extern OCTINTERP_API herr_t |
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198 hdf5_add_attr (hid_t loc_id, const char *attr_name); |
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199 |
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200 |
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201 extern OCTINTERP_API herr_t |
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202 hdf5_add_scalar_attr (hid_t loc_id, hid_t type_id, |
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203 const char *attr_name, void *buf); |
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204 |
| 5351 | 205 #ifdef IDX_TYPE_LONG |
| 206 #define H5T_NATIVE_IDX H5T_NATIVE_LONG | |
| 207 #else | |
| 208 #define H5T_NATIVE_IDX H5T_NATIVE_INT | |
| 209 #endif | |
| 210 | |
| 4634 | 211 #endif |
| 212 | |
| 4695 | 213 #endif |