view scripts/sparse/bicgstab.m @ 14868:5d3a684236b0

maint: Use Octave coding conventions for cuddling parentheses in scripts directory * lin2mu.m, loadaudio.m, wavread.m, accumarray.m, bicubic.m, celldisp.m, colon.m, cplxpair.m, dblquad.m, divergence.m, genvarname.m, gradient.m, int2str.m, interp1.m, interp1q.m, interp2.m, interpn.m, loadobj.m, nthargout.m, __isequal__.m, __splinen__.m, quadgk.m, quadl.m, quadv.m, rat.m, rot90.m, rotdim.m, saveobj.m, subsindex.m, triplequad.m, delaunay3.m, griddata.m, inpolygon.m, tsearchn.m, voronoi.m, get_first_help_sentence.m, which.m, gray2ind.m, pink.m, dlmwrite.m, strread.m, textread.m, textscan.m, housh.m, ishermitian.m, issymmetric.m, krylov.m, logm.m, null.m, rref.m, compare_versions.m, copyfile.m, dump_prefs.m, edit.m, fileparts.m, getappdata.m, isappdata.m, movefile.m, orderfields.m, parseparams.m, __xzip__.m, rmappdata.m, setappdata.m, swapbytes.m, unpack.m, ver.m, fminbnd.m, fminunc.m, fsolve.m, glpk.m, lsqnonneg.m, qp.m, sqp.m, configure_make.m, copy_files.m, describe.m, get_description.m, get_forge_pkg.m, install.m, installed_packages.m, is_architecture_dependent.m, load_package_dirs.m, print_package_description.m, rebuild.m, repackage.m, save_order.m, shell.m, allchild.m, ancestor.m, area.m, axes.m, axis.m, clabel.m, close.m, colorbar.m, comet.m, comet3.m, contour.m, cylinder.m, ezmesh.m, ezsurf.m, findobj.m, fplot.m, hist.m, isocolors.m, isonormals.m, isosurface.m, isprop.m, legend.m, mesh.m, meshz.m, pareto.m, pcolor.m, peaks.m, plot3.m, plotmatrix.m, plotyy.m, polar.m, print.m, __add_datasource__.m, __add_default_menu__.m, __axes_limits__.m, __bar__.m, __clabel__.m, __contour__.m, __errcomm__.m, __errplot__.m, __ezplot__.m, __file_filter__.m, __fltk_print__.m, __ghostscript__.m, __gnuplot_print__.m, __go_draw_axes__.m, __go_draw_figure__.m, __interp_cube__.m, __marching_cube__.m, __patch__.m, __pie__.m, __plt__.m, __print_parse_opts__.m, __quiver__.m, __scatter__.m, __stem__.m, __tight_eps_bbox__.m, __uigetdir_fltk__.m, __uigetfile_fltk__.m, __uiputfile_fltk__.m, quiver.m, quiver3.m, rectangle.m, refreshdata.m, ribbon.m, scatter.m, semilogy.m, shading.m, slice.m, subplot.m, surface.m, surfl.m, surfnorm.m, text.m, uigetfile.m, uiputfile.m, whitebg.m, deconv.m, mkpp.m, pchip.m, polyaffine.m, polyder.m, polygcd.m, polyout.m, polyval.m, ppint.m, ppjumps.m, ppval.m, residue.m, roots.m, spline.m, splinefit.m, addpref.m, getpref.m, setpref.m, ismember.m, setxor.m, arch_fit.m, arch_rnd.m, arch_test.m, autoreg_matrix.m, diffpara.m, fftconv.m, filter2.m, hanning.m, hurst.m, periodogram.m, triangle_sw.m, sinc.m, spectral_xdf.m, spencer.m, stft.m, synthesis.m, unwrap.m, yulewalker.m, bicgstab.m, gmres.m, pcg.m, pcr.m, __sprand_impl__.m, speye.m, spfun.m, sprandn.m, spstats.m, svds.m, treelayout.m, treeplot.m, bessel.m, factor.m, legendre.m, perms.m, primes.m, magic.m, toeplitz.m, corr.m, cov.m, mean.m, median.m, mode.m, qqplot.m, quantile.m, ranks.m, zscore.m, logistic_regression_likelihood.m, bartlett_test.m, chisquare_test_homogeneity.m, chisquare_test_independence.m, kolmogorov_smirnov_test.m, run_test.m, u_test.m, wilcoxon_test.m, z_test.m, z_test_2.m, bin2dec.m, dec2base.m, mat2str.m, strcat.m, strchr.m, strjust.m, strtok.m, substr.m, untabify.m, assert.m, demo.m, example.m, fail.m, speed.m, test.m, now.m: Use Octave coding conventions for cuddling parentheses in scripts directory.
author Rik <octave@nomad.inbox5.com>
date Tue, 17 Jul 2012 07:08:39 -0700
parents 72b8b39e12be
children 12005245b645
line wrap: on
line source

## Copyright (C) 2008-2012 Radek Salac
## Copyright (C) 2012 Carlo de Falco
##
## This file is part of Octave.
##
## Octave is free software; you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 3 of the License, or (at
## your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
## General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <http://www.gnu.org/licenses/>.

## -*- texinfo -*-
## @deftypefn  {Function File} {@var{x} =} bicgstab (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{M1}, @var{M2}, @var{x0})
## @deftypefnx {Function File} {@var{x} =} bicgstab (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{P})
## @deftypefnx {Function File} {[@var{x}, @var{flag}, @var{relres}, @var{iter}, @var{resvec}] =} bicgstab (@var{A}, @var{b}, @dots{})
## Solve @code{A x = b} using the stabilizied Bi-conjugate gradient iterative
## method.
##
## @itemize @minus
## @item @var{rtol} is the relative tolerance, if not given or set to
## [] the default value 1e-6 is used.
##
## @item @var{maxit} the maximum number of outer iterations, if not
## given or set to [] the default value @code{min (20, numel (b))} is
## used.
##
## @item @var{x0} the initial guess, if not given or set to [] the
## default value @code{zeros (size (b))} is used.
## @end itemize
##
## @var{A} can be passed as a matrix or as a function handle or
## inline function @code{f} such that @code{f(x) = A*x}.
##
## The preconditioner @var{P} is given as @code{P = M1 * M2}.
## Both @var{M1} and @var{M2} can be passed as a matrix or as a function
## handle or inline function @code{g} such that @code{g(x) = M1 \ x} or
## @code{g(x) = M2 \ x}.
##
## If called with more than one output parameter
##
## @itemize @minus
## @item @var{flag} indicates the exit status:
##
## @itemize @minus
## @item 0: iteration converged to the within the chosen tolerance
##
## @item 1: the maximum number of iterations was reached before convergence
##
## @item 3: the algorithm reached stagnation
## @end itemize
## (the value 2 is unused but skipped for compatibility).
##
## @item @var{relres} is the final value of the relative residual.
##
## @item @var{iter} is the number of iterations performed.
##
## @item @var{resvec} is a vector containing the relative residual at each iteration.
## @end itemize
##
## @seealso{bicg, cgs, gmres, pcg}
##
## @end deftypefn

function [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, maxit,
                                                     M1, M2, x0)

  if (nargin >= 2 && nargin <= 7 && isvector (full (b)))

    if (ischar (A))
      A = str2func (A);
    elseif (ismatrix (A))
      Ax  = @(x) A  * x;
    elseif (isa (A, "function_handle"))
      Ax  = @(x) feval (A, x);
    else
      error (["bicgstab: first argument is expected " ...
              "to be a function or a square matrix"]);
    endif

    if (nargin < 3 || isempty (tol))
      tol = 1e-6;
    endif

    if (nargin < 4 || isempty (maxit))
      maxit = min (rows (b), 20);
    endif

    if (nargin < 5 || isempty (M1))
      M1m1x = @(x) x;
    elseif (ischar (M1))
      M1m1x = str2func (M1);
    elseif (ismatrix (M1))
      M1m1x = @(x) M1  \ x;
    elseif (isa (M1, "function_handle"))
      M1m1x = @(x) feval (M1, x);
    else
      error (["bicgstab: preconditioner is " ...
              "expected to be a function or matrix"]);
    endif

    if (nargin < 6 || isempty (M2))
      M2m1x = @(x) x;
    elseif (ischar (M2))
      M2m1x = str2func (M2);
    elseif (ismatrix (M2))
      M2m1x = @(x) M2  \ x;
    elseif (isa (M2, "function_handle"))
      M2m1x = @(x) feval (M2, x);
    else
      error (["bicgstab: preconditioner is "...
              "expected to be a function or matrix"]);
    endif

    precon = @(x) M2m1x (M1m1x (x));

    if (nargin < 7 || isempty (x0))
      x0 = zeros (size (b));
    endif

    ## specifies initial estimate x0
    if (nargin < 7)
      x = zeros (rows (b), 1);
    else
      x = x0;
    endif

    norm_b = norm (b);

    res = b - Ax (x);
    rr = res;

    ## Vector of the residual norms for each iteration.
    resvec = norm (res) / norm_b;

    ## Default behaviour we don't reach tolerance tol within maxit iterations.
    flag = 1;

    for iter = 1:maxit
      rho_1 = res' * rr;

      if (iter == 1)
        p = res;
      else
        beta = (rho_1 / rho_2) * (alpha / omega);
        p = res + beta * (p - omega * v);
      endif

      phat = precon (p);

      v = Ax (phat);
      alpha = rho_1 / (rr' * v);
      s = res - alpha * v;

      shat = precon (s);

      t = Ax (shat);
      omega = (t' * s) / (t' * t);
      x = x + alpha * phat + omega * shat;
      res = s - omega * t;
      rho_2 = rho_1;

      relres = norm (res) / norm_b;
      resvec = [resvec; relres];

      if (relres <= tol)
        ## We reach tolerance tol within maxit iterations.
        flag = 0;
        break;
      elseif (resvec(end) == resvec(end - 1))
        ## The method stagnates.
        flag = 3;
        break;
      endif
    endfor

    if (nargout < 2)
      if (flag == 0)
        printf ("bicgstab converged at iteration %i ", iter);
        printf ("to a solution with relative residual %e\n", relres);
      elseif (flag == 3)
        printf ("bicgstab stopped at iteration %i ", iter);
        printf ("without converging to the desired tolerance %e\n", tol);
        printf ("because the method stagnated.\n");
        printf ("The iterate returned (number %i) ", iter);
        printf ("has relative residual %e\n", relres);
      else
        printf ("bicgstab stopped at iteration %i ", iter);
        printf ("without converging to the desired toleranc %e\n", tol);
        printf ("because the maximum number of iterations was reached.\n");
        printf ("The iterate returned (number %i) ", iter);
        printf ("has relative residual %e\n", relres);
      endif
    endif

  else
    print_usage ();
  endif

endfunction


%!demo
%! % Solve system of A*x=b
%! A = [5 -1 3;-1 2 -2;3 -2 3];
%! b = [7;-1;4];
%! [x, flag, relres, iter, resvec] = bicgstab (A, b)

%!shared A, b, n, M1, M2
%!
%!test
%! n = 100;
%! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n);
%! b = sum (A, 2);
%! tol = 1e-8;
%! maxit = 15;
%! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n);
%! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n);
%! [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, maxit, M1, M2);
%! assert (x, ones (size (b)), 1e-7);
%!
%!test
%!function y = afun (x, a)
%!  y = a * x;
%!endfunction
%!
%! tol = 1e-8;
%! maxit = 15;
%!
%! [x, flag, relres, iter, resvec] = bicgstab (@(x) afun (x, A), b,
%!                                             tol, maxit, M1, M2);
%! assert (x, ones (size (b)), 1e-7);

%!test
%! n = 100;
%! tol = 1e-8;
%! a = sprand (n, n, .1);
%! A = a'*a + 100 * eye (n);
%! b = sum (A, 2);
%! [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, [], diag (diag (A)));
%! assert (x, ones (size (b)), 1e-7);