view scripts/miscellaneous/unpack.m @ 19268:6ebc2ca01c76

unpack.m: Overhaul function. * unpack.m: Redo docstring. Match function variable name to documentation name. Correctly report error if file is not found and input is cellstr. Reword error() messages to be clearer. Allow case insensitive matching of extensions such as ".gz" or ".GZ". Fix huge problems with files not ending up in destination directory specified. Eliminate for loop and call strrep directly with cell array input. Add BIST tests.
author Rik <rik@octave.org>
date Tue, 07 Oct 2014 13:13:16 -0700
parents 0ded8964c13a
children cac9d4c49522
line wrap: on
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## Copyright (C) 2006-2013 Bill Denney
##
## This file is part of Octave.
##
## Octave is free software; you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 3 of the License, or (at
## your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
## General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <http://www.gnu.org/licenses/>.

## -*- texinfo -*-
## @deftypefn  {Function File} {@var{files} =} unpack (@var{file})
## @deftypefnx {Function File} {@var{files} =} unpack (@var{file}, @var{dir})
## @deftypefnx {Function File} {@var{files} =} unpack (@var{file}, @var{dir}, @var{filetype})
## Unpack the archive @var{file} based on its extension to the directory
## @var{dir}.
##
## If @var{file} is a list of strings, then each file is unpacked
## individually.  Shell wildcards in the filename such as @samp{*} or @samp{?}
## are accepted and expanded.
##
## If @var{dir} is not specified or is empty (@code{[]}), it defaults to the
## current directory.  If a directory is in the file list, then @var{filetype}
## must also be specified.
##
## The specific archive filetype is inferred from the extension of the file.
## The @var{filetype} may also be specified directly using a string which
## corresponds to a known extension.
##
## Valid filetype extensions:
##
## @table @code
## @item  bz
## @itemx bz2
## bzip archive
##
## @item gz
## gzip archive
##
## @item tar
## tar archive
##
## @item  tarbz
## @itemxtarbz2
## @itemx tbz
## @itemx tbz2
## tar + bzip archive
##
## @item  targz
## @itemx tgz
## tar + gzip archive
##
## @item z
## compress archive
##
## @item zip
## zip archive
## @end table
##
## The optional return value is a list of @var{files} unpacked.
## @seealso{bzip2, gzip, zip, tar}
## @end deftypefn

## Author: Bill Denney <denney@seas.upenn.edu>

function filelist = unpack (file, dir = ".", filetype = "")

  if (nargin < 1 || nargin > 3)
    print_usage ();
  endif

  if (! ischar (file) && ! iscellstr (file))
    error ("unpack: FILE must be a string or cell array of strings");
  endif

  ## Convert char arrays to cell strings to simplify further processing
  if (ischar (file))
    file = cellstr (file);
  endif
  if (numel (file) == 1)
    gfile = glob (file);
    if (isempty (gfile))
      error ('unpack: file "%s" not found', file{1});
    else
      file = gfile;
    endif
  endif

  ## Recursively unpack cellstr arrays one file at a time
  if (numel (file) > 1)
    files = {};
    for i = 1:numel (file)
      tmpfiles = unpack (file{i}, dir);
      files = {files{:} tmpfiles{:}};
    endfor

    ## Return output if requested.
    if (nargout > 0)
      filelist = files;
    endif
    return;

  else
    file = file{1};
  endif

  if (isdir (file))
    if (isempty (filetype))
      error ("unpack: FILETYPE must be given for a directory");
    elseif (! any (strcmpi (filetype, "gunzip")))
      error ('unpack: FILETYPE must be "gunzip" for a directory');
    endif
    ext = ".gz";
  else
    [pathstr, name, ext] = fileparts (file);

    ## Check to see if it's .tar.gz, .tar.Z, etc.
    if (any (strcmpi ({".gz" ".Z" ".bz2" ".bz"}, ext)))
      [~, tmpname, tmpext] = fileparts (name);
      if (strcmpi (tmpext, ".tar"))
        name = tmpname;
        ext = [tmpext ext];
      endif
    endif

    ## If the file is a URL, download it and then work with that file.
    if (! isempty (strfind (file, "://")))
      ## FIXME: The above code is not a perfect test for a URL
      urlfile = file;
      tmpfile = [tmpnam() ext];
      [file, success, msg] = urlwrite (urlfile, tmpfile);
      if (! success)
        error ('unpack: could not fetch "%s": %s', urlfile, msg);
      endif
    endif

  endif

  file = canonicalize_file_name (file);

  ## Instructions on what to do for any extension.
  ##
  ## The field names are the file extension without periods.
  ## The first cell is what is executed to unpack an archive verbosely.
  ## The second cell is what is executed to unpack an archive quietly.
  ## The third cell is the function to execute on output to get the files list.
  ## The fourth cell indicates if the files may need to be manually moved
  ##   (i.e., tar and unzip decompress into the current directory while
  ##    bzip2 and gzip decompress the file at its location).
  persistent commandlist;
  if (isempty (commandlist))
    commandlist.gz = {'gzip -d -v -r "%s"', ...
                      'gzip -d -r "%s"', ...
                      @__parse_gzip__, true};
    commandlist.z = commandlist.gz;
    commandlist.bz2 = {'bzip2 -d -v "%s"', ...
                       'bzip2 -d "%s"', ...
                       @__parse_bzip2__, true};
    commandlist.bz = commandlist.bz2;
    commandlist.tar = {'tar xvf "%s"', ...
                       'tar xf "%s"', ...
                       @__parse_tar__, false};
    commandlist.targz = {'gzip -d -c "%s" | tar xvf -', ...
                         'gzip -d -c "%s" | tar xf -', ...
                         @__parse_tar__, false};
    commandlist.tgz = commandlist.targz;
    commandlist.tarbz2 = {'bzip2 -d -c "%s" | tar xvf -', ...
                          'bzip2 -d -c "%s" | tar xf -', ...
                          @__parse_tar__, false};
    commandlist.tarbz = commandlist.tarbz2;
    commandlist.tbz2 = commandlist.tarbz2;
    commandlist.tbz = commandlist.tarbz2;
    commandlist.zip = {'unzip -n "%s"', ...
                       'unzip -nq "%s"', ...
                       @__parse_zip__, false};
  endif

  ## Unzip doesn't actually care about the extension
  if (strcmpi (filetype, "unzip"))
    nodotext = "zip";
  else
    nodotext = ext(ext != '.');
  endif

  if (isfield (commandlist, tolower (nodotext)))
    [commandv, commandq, parsefcn, move] = deal (commandlist.(nodotext){:});
    origdir = pwd ();
    if (move)
      startdir = fileparts (file); 
    else
      startdir = origdir;
    endif
    cstartdir = canonicalize_file_name (startdir);
    cenddir = canonicalize_file_name (dir);
    needmove = move && ! strcmp (cstartdir, cenddir);
    if (nargout > 0 || needmove)
      command = commandv;
    else
      command = commandq;
    endif
  else
    warning ("unpack: unrecognized FILETYPE <%s>", ext);
    files = file;
    return;
  endif

  ## Create the directory if necessary.
  s = stat (dir);
  if (isempty (s))
    [status, msg] = mkdir (dir);
    if (! status)
      error ("unpack: mkdir failed to create %s: %s", dir, msg);
    endif
  elseif (! S_ISDIR (s.mode))
    error ("unpack: %s: not a directory", dir);
  endif

  unwind_protect
    cd (dir);
    [status, output] = system (sprintf ([command " 2>&1"], file));
  unwind_protect_cleanup
    cd (origdir);
  end_unwind_protect

  if (status)
    error ("unpack: unarchiving program exited with status: %d\n%s",
           status, output);
  endif

  if (nargout > 0 || needmove)
    ## Trim the last CR if needed.
    ## FIXME: Will this need to change to a check for "\r\n" for windows?
    if (output(end) == "\n")
      output(end) = [];
    endif
    files = parsefcn (ostrsplit (output, "\n"))';

    ## Move files if necessary.
    if (needmove)
      [st, msg] = movefile (files, cenddir);
      if (! st)
        error ('unpack: unable to move files to "%s": %s', dir, msg);
      endif

      ## Fix the names of the files since they were moved.
      files = strrep (files, cstartdir, cenddir);
    endif

    ## Return output if requested.
    if (nargout > 0)
      filelist = files;
    endif
  endif

endfunction

function files = __parse_zip__ (output)
  ## Parse the output from zip and unzip.

  ## Skip first line which is Archive header.
  files = char (output(2:end));
  ## Trim constant width prefix and return cell array.
  files = cellstr (files(:,14:end))
endfunction

function output = __parse_tar__ (output)
  ## This is a no-op, but it makes things simpler for other cases.
endfunction

function files = __parse_gzip__ (output)
  ## Parse the output from gzip and gunzip returning the files
  ## commpressed (or decompressed).

  files = regexprep (output, '^.+ with (.*)$', '$1');
endfunction

function files = __parse_bzip2__ (output)
  ## Parse the output from bzip2 and bunzip2 returning the files
  ## commpressed (or decompressed).

  ## Strip leading blanks and .bz2 extension from file name
  files = regexprep (output, '^\s+(.*)\.bz2: .*', '$1');
endfunction


## FIXME: Maybe there should be a combined test script to test all of the
##        various pack/unpack routines in the tests/ directory.
%!test
%! ## Create temporary file for packing and unpacking
%! fname = tempname ();
%! fid = fopen (fname, "wt");
%! if (fid < 0)
%!   error ("unpack: Unable to open temporary file for testing");
%! endif
%! fprintf (fid, "Hello World\n");
%! fprintf (fid, "123 456 789\n");
%! fclose (fid);
%!
%! unwind_protect
%!   copyfile (fname, [fname ".orig"]);
%!   gzip (fname, P_tmpdir);
%!   filelist = unpack ([fname ".gz"], P_tmpdir);
%!   assert (filelist{1}, fname); 
%!   r = system (sprintf ("diff %s %s.orig", fname, fname));
%!   if (r)
%!     error ("unpack: Unpacked file does not equal original");
%!   endif
%! unwind_protect_cleanup
%!   exist (fname) && unlink (fname);
%!   unlink ([fname ".orig"]);
%! end_unwind_protect

## Test input validation
%!error unpack ()
%!error unpack (1,2,3,4)
%!error <FILE must be a string or cell array of strings> unpack (1)
%!error <file "_%NOT_A_FILENAME%_" not found> unpack ("_%NOT_A_FILENAME%_")
%!error <file "_%NOT_A_FILENAME%_" not found> unpack ({"_%NOT_A_FILENAME%_"})
%!error <file "_%NOT_A_FILENAME%_" not found> unpack ({"_%NOT_A_FILENAME%_", "2nd_filename"})
%!error <FILETYPE must be given for a directory>
%! if (isunix || ismac)
%!   unpack ("/");
%! else
%!   unpack ('C:\');
%! endif
%!error <FILETYPE must be "gunzip" for a directory>
%! if (isunix || ismac)
%!   unpack ("/", [], "foobar");
%! else
%!   unpack ('C:\', [], "foobar");
%! endif