view scripts/statistics/kendall.m @ 28240:2fb684dc2ec2

axis.m: Implement "fill" option for Matlab compatibility. * axis.m: Document that "fill" is a synonym for "normal". Place "vis3d" option in documentation table for modes which affect aspect ratio. Add strcmpi (opt, "fill") to decode opt and executed the same behavior as "normal".
author Rik <rik@octave.org>
date Fri, 24 Apr 2020 13:16:09 -0700
parents b09432b20a84
children 28de41192f3c 0a5b15007766
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########################################################################
##
## Copyright (C) 1995-2020 The Octave Project Developers
##
## See the file COPYRIGHT.md in the top-level directory of this
## distribution or <https://octave.org/copyright/>.
##
## This file is part of Octave.
##
## Octave is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <https://www.gnu.org/licenses/>.
##
########################################################################

## -*- texinfo -*-
## @deftypefn  {} {} kendall (@var{x})
## @deftypefnx {} {} kendall (@var{x}, @var{y})
## @cindex Kendall's Tau
## Compute Kendall's
## @tex
## $\tau$.
## @end tex
## @ifnottex
## @var{tau}.
## @end ifnottex
##
## For two data vectors @var{x}, @var{y} of common length @math{N}, Kendall's
## @tex
## $\tau$
## @end tex
## @ifnottex
## @var{tau}
## @end ifnottex
## is the correlation of the signs of all rank differences of
## @var{x} and @var{y}; i.e., if both @var{x} and @var{y} have distinct
## entries, then
##
## @tex
## $$ \tau = {1 \over N(N-1)} \sum_{i,j} {\rm sign}(q_i-q_j) \, {\rm sign}(r_i-r_j) $$
## @end tex
## @ifnottex
##
## @example
## @group
##          1
## @var{tau} = -------   SUM sign (@var{q}(i) - @var{q}(j)) * sign (@var{r}(i) - @var{r}(j))
##       N (N-1)   i,j
## @end group
## @end example
##
## @end ifnottex
## @noindent
## in which the
## @tex
## $q_i$ and $r_i$
## @end tex
## @ifnottex
## @var{q}(i) and @var{r}(i)
## @end ifnottex
## are the ranks of @var{x} and @var{y}, respectively.
##
## If @var{x} and @var{y} are drawn from independent distributions,
## Kendall's
## @tex
## $\tau$
## @end tex
## @ifnottex
## @var{tau}
## @end ifnottex
## is asymptotically normal with mean 0 and variance
## @tex
## ${2 (2N+5) \over 9N(N-1)}$.
## @end tex
## @ifnottex
## @code{(2 * (2N+5)) / (9 * N * (N-1))}.
## @end ifnottex
##
## @code{kendall (@var{x})} is equivalent to @code{kendall (@var{x},
## @var{x})}.
## @seealso{ranks, spearman}
## @end deftypefn

function tau = kendall (x, y = [])

  if (nargin < 1 || nargin > 2)
    print_usage ();
  endif

  if (   ! (isnumeric (x) || islogical (x))
      || ! (isnumeric (y) || islogical (y)))
    error ("kendall: X and Y must be numeric matrices or vectors");
  endif

  if (ndims (x) != 2 || ndims (y) != 2)
    error ("kendall: X and Y must be 2-D matrices or vectors");
  endif

  if (isrow (x))
    x = x.';
  endif
  [n, c] = size (x);

  if (nargin == 2)
    if (isrow (y))
      y = y.';
    endif
    if (rows (y) != n)
      error ("kendall: X and Y must have the same number of observations");
    else
      x = [x, y];
    endif
  endif

  if (isa (x, "single") || isa (y, "single"))
    cls = "single";
  else
    cls = "double";
  endif
  r   = ranks (x);
  m   = sign (kron (r, ones (n, 1, cls)) - kron (ones (n, 1, cls), r));
  tau = corr (m);

  if (nargin == 2)
    tau = tau(1 : c, (c + 1) : columns (x));
  endif

endfunction


%!test
%! x = [1:2:10];
%! y = [100:10:149];
%! assert (kendall (x,y), 1, 5*eps);
%! assert (kendall (x,fliplr (y)), -1, 5*eps);

%!assert (kendall (logical (1)), 1)
%!assert (kendall (single (1)), single (1))

## Test input validation
%!error kendall ()
%!error kendall (1, 2, 3)
%!error kendall (['A'; 'B'])
%!error kendall (ones (2,1), ['A'; 'B'])
%!error kendall (ones (2,2,2))
%!error kendall (ones (2,2), ones (2,2,2))
%!error kendall (ones (2,2), ones (3,2))