view liboctave/numeric/LSODE-opts.in @ 31253:a40c0b7aa376

maint: changes to follow Octave coding conventions. * NEWS.8.md: Wrap lines to 72 chars. * LSODE-opts.in: Use two spaces after sentence ending period. * LSODE.cc: Use minimum of two spaces between code and start of comment. * MemoizedFunction.m: Change copyright date to 2022 since this is the year it was accepted into core. Don't wrap error() lines to 80 chars. Use newlines to improve readability of switch statements. Use minimum of two spaces between code and start of comment. * del2.m, integral.m, interp1.m, interp2.m, griddata.m, inpolygon.m, waitbar.m, cubehelix.m, ind2x.m, importdata.m, textread.m, logm.m, lighting.m, shading.m, xticklabels.m, yticklabels.m, zticklabels.m, colorbar.m, meshc.m, print.m, __gnuplot_draw_axes__.m, struct2hdl.m, ppval.m, ismember.m, iqr.m: Use a space between comment character '#' and start of comment. Use hyphen for adjectives describing dimensions such as "1-D". * vectorize.m, ode23s.m: Use is_function_handle() instead of "isa (x, "function_handle")" for clarity and performance. * clearAllMemoizedCaches.m: Change copyright date to 2022 since this is the year it was accepted into core. Remove input validation which is done by interpreter. Use two newlines between end of code and start of BIST tests. * memoize.m: Change copyright date to 2022 since this is the year it was accepted into core. Re-wrap documentation to 80 chars. Use is_function_handle() instead of "isa (x, "function_handle")" for clarity and performance. Use two newlines between end of code and start of BIST tests. Use semicolon for assert statements within %!test block. Re-write BIST tests for input validation. * __memoize__.m: Change copyright date to 2022 since this is the year it was accepted into core. Use spaces in for statements to improve readability. * unique.m: Add FIXME note to commented BIST test * dec2bin.m: Remove stray newline at end of file. * triplequad.m: Reduce doubly-commented BIST syntax using "#%!#" to "#%!". * delaunayn.m: Use input variable names in error() statements. Use minimum of two spaces between code and start of comment. Use hyphen for describing dimensions. Use two newlines between end of code and start of BIST tests. Update BIST tests to pass.
author Rik <rik@octave.org>
date Mon, 03 Oct 2022 18:06:55 -0700
parents de6fc38c78c6
children 96f751f8392c
line wrap: on
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########################################################################
##
## Copyright (C) 2002-2022 The Octave Project Developers
##
## See the file COPYRIGHT.md in the top-level directory of this
## distribution or <https://octave.org/copyright/>.
##
## This file is part of Octave.
##
## Octave is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
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## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <https://www.gnu.org/licenses/>.
##
########################################################################

CLASS = "LSODE"

INCLUDE = "ODE.h"

OPTION
  NAME = "absolute tolerance"
  DOC_ITEM
Absolute tolerance.  May be either vector or scalar.  If a vector, it
must match the dimension of the state vector.

  END_DOC_ITEM
  TYPE = "Array<double>"
  SET_ARG_TYPE = "const $TYPE&"
  INIT_BODY
    $OPTVAR.resize (dim_vector (1, 1));
    $OPTVAR(0) = ::sqrt (std::numeric_limits<double>::epsilon ());
  END_INIT_BODY
  SET_CODE
    void set_$OPT (double val)
      {
        $OPTVAR.resize (dim_vector (1, 1));
        $OPTVAR(0) = (val > 0.0) ? val : ::sqrt (std::numeric_limits<double>::epsilon ());
        m_reset = true;
      }

    void set_$OPT (const $TYPE& val)
      { $OPTVAR = val; m_reset = true; }
  END_SET_CODE
END_OPTION

OPTION
  NAME = "relative tolerance"
  DOC_ITEM
Relative tolerance parameter.  Unlike the absolute tolerance, this
parameter may only be a scalar.

The local error test applied at each integration step is

@example
@group
  abs (local error in x(i)) <= ...
      rtol * abs (y(i)) + atol(i)
@end group
@end example

  END_DOC_ITEM
  TYPE = "double"
  INIT_VALUE = "::sqrt (std::numeric_limits<double>::epsilon ())"
  SET_EXPR = "(val > 0.0) ? val : ::sqrt (std::numeric_limits<double>::epsilon ())"
END_OPTION

OPTION
  NAME = "integration method"
  DOC_ITEM
A string specifying the method of integration to use to solve the ODE
system.  Valid values are

@table @asis
@item  @qcode{"adams"}
@itemx @qcode{"non-stiff"}
No Jacobian used (even if it is available).

@item  @qcode{"bdf"}
@itemx @qcode{"stiff"}
Use stiff backward differentiation formula (BDF) method.  If a
function to compute the Jacobian is not supplied, @code{lsode} will
compute a finite difference approximation of the Jacobian matrix.
@end table

  END_DOC_ITEM
  TYPE = "std::string"
  SET_ARG_TYPE = "const $TYPE&"
  INIT_VALUE = ""stiff""
  SET_BODY
    if (val == "stiff" || val == "bdf")
      $OPTVAR = "stiff";
    else if (val == "non-stiff" || val == "adams")
      $OPTVAR = "non-stiff";
    else
      (*current_liboctave_error_handler)
        ("lsode_options: method must be \"stiff\", \"bdf\", \"non-stiff\", or \"adams\"");
  END_SET_BODY
END_OPTION

OPTION
  NAME = "initial step size"
  DOC_ITEM
The step size to be attempted on the first step (default is determined
automatically).

  END_DOC_ITEM
  TYPE = "double"
  INIT_VALUE = "-1.0"
  SET_EXPR = "(val >= 0.0) ? val : -1.0"
END_OPTION

OPTION
  NAME = "maximum order"
  DOC_ITEM
Restrict the maximum order of the solution method.  If using the Adams
method, this option must be between 1 and 12.  Otherwise, it must be
between 1 and 5, inclusive.

  END_DOC_ITEM
  TYPE = "octave_idx_type"
  INIT_VALUE = "-1"
  SET_EXPR = "val"
END_OPTION

OPTION
  NAME = "maximum step size"
  DOC_ITEM
Setting the maximum stepsize will avoid passing over very large
regions  (default is not specified).

  END_DOC_ITEM
  TYPE = "double"
  INIT_VALUE = "-1.0"
  SET_EXPR = "(val >= 0.0) ? val : -1.0"
END_OPTION

OPTION
  NAME = "minimum step size"
  DOC_ITEM
The minimum absolute step size allowed (default is 0).

  END_DOC_ITEM
  TYPE = "double"
  INIT_VALUE = "0.0"
  SET_EXPR = "(val >= 0.0) ? val : 0.0"
END_OPTION

OPTION
  NAME = "step limit"
  DOC_ITEM
Maximum number of steps allowed (default is 100000).
  END_DOC_ITEM
  TYPE = "octave_idx_type"
  INIT_VALUE = "100000"
  SET_EXPR = "val"
END_OPTION

OPTION
  NAME = "jacobian type"
  DOC_ITEM
A string specifying the type of Jacobian used with the stiff backward
differentiation formula (BDF) integration method.  Valid values are

@table @asis
@item @qcode{"full"}
The default.  All partial derivatives are approximated or used from the
user-supplied Jacobian function.

@item @qcode{"banded"}
Only the diagonal and the number of lower and upper subdiagonals specified by
the options @qcode{"lower jacobian subdiagonals"} and @qcode{"upper jacobian
subdiagonals"}, respectively, are approximated or used from the user-supplied
Jacobian function.  A user-supplied Jacobian function may set all other
partial derivatives to arbitrary values.

@item @qcode{"diagonal"}
If a Jacobian function is supplied by the user, this setting has no effect.
A Jacobian approximated by @code{lsode} is restricted to the diagonal, where
each partial derivative is computed by applying a finite change to all
elements of the state together; if the real Jacobian is indeed always diagonal,
this has the same effect as applying the finite change only to the respective
element of the state, but is more efficient.
@end table

  END_DOC_ITEM
  TYPE = "std::string"
  SET_ARG_TYPE = "const $TYPE&"
  INIT_VALUE = ""full""
  SET_BODY
    if (val == "full" || val == "banded" || val == "diagonal")
      $OPTVAR = val;
    else
      (*current_liboctave_error_handler)
        ("lsode_options: jacobian type must be \"full\", \"banded\", or \"diagonal\"");
  END_SET_BODY
END_OPTION

OPTION
  NAME = "lower jacobian subdiagonals"
  DOC_ITEM
Number of lower subdiagonals used if option @qcode{"jacobian type"} is set to
@qcode{"banded"}.  The default is zero.

  END_DOC_ITEM
  TYPE = "octave_idx_type"
  INIT_VALUE = "0"
  SET_EXPR = "val"
END_OPTION

OPTION
  NAME = "upper jacobian subdiagonals"
  DOC_ITEM
Number of upper subdiagonals used if option @qcode{"jacobian type"} is set to
@qcode{"banded"}.  The default is zero.

  END_DOC_ITEM
  TYPE = "octave_idx_type"
  INIT_VALUE = "0"
  SET_EXPR = "val"
END_OPTION