view libinterp/corefcn/psi.cc @ 27918:b442ec6dda5c

use centralized file for copyright info for individual contributors * COPYRIGHT.md: New file. * In most other files, use "Copyright (C) YYYY-YYYY The Octave Project Developers" instead of tracking individual names in separate source files. The motivation is to reduce the effort required to update the notices each year. Until now, the Octave source files contained copyright notices that list individual contributors. I adopted these file-scope copyright notices because that is what everyone was doing 30 years ago in the days before distributed version control systems. But now, with many contributors and modern version control systems, having these file-scope copyright notices causes trouble when we update copyright years or refactor code. Over time, the file-scope copyright notices may become outdated as new contributions are made or code is moved from one file to another. Sometimes people contribute significant patches but do not add a line claiming copyright. Other times, people add a copyright notice for their contribution but then a later refactoring moves part or all of their contribution to another file and the notice is not moved with the code. As a practical matter, moving such notices is difficult -- determining what parts are due to a particular contributor requires a time-consuming search through the project history. Even managing the yearly update of copyright years is problematic. We have some contributors who are no longer living. Should we update the copyright dates for their contributions when we release new versions? Probably not, but we do still want to claim copyright for the project as a whole. To minimize the difficulty of maintaining the copyright notices, I would like to change Octave's sources to use what is described here: https://softwarefreedom.org/resources/2012/ManagingCopyrightInformation.html in the section "Maintaining centralized copyright notices": The centralized notice approach consolidates all copyright notices in a single location, usually a top-level file. This file should contain all of the copyright notices provided project contributors, unless the contribution was clearly insignificant. It may also credit -- without a copyright notice -- anyone who helped with the project but did not contribute code or other copyrighted material. This approach captures less information about contributions within individual files, recognizing that the DVCS is better equipped to record those details. As we mentioned before, it does have one disadvantage as compared to the file-scope approach: if a single file is separated from the distribution, the recipient won't see the contributors' copyright notices. But this can be easily remedied by including a single copyright notice in each file's header, pointing to the top-level file: Copyright YYYY-YYYY The Octave Project Developers See the COPYRIGHT file at the top-level directory of this distribution or at https://octave.org/COPYRIGHT.html. followed by the usual GPL copyright statement. For more background, see the discussion here: https://lists.gnu.org/archive/html/octave-maintainers/2020-01/msg00009.html Most files in the following directories have been skipped intentinally in this changeset: doc libgui/qterminal liboctave/external m4
author John W. Eaton <jwe@octave.org>
date Mon, 06 Jan 2020 15:38:17 -0500
parents 00f796120a6d
children 1891570abac8
line wrap: on
line source

/*

Copyright (C) 2016-2019 The Octave Project Developers

See the file COPYRIGHT.md in the top-level directory of this distribution
or <https://octave.org/COPYRIGHT.html/>.


This file is part of Octave.

Octave is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

Octave is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with Octave; see the file COPYING.  If not, see
<https://www.gnu.org/licenses/>.

*/

#if defined (HAVE_CONFIG_H)
#  include "config.h"
#endif

#include "ov.h"
#include "defun.h"
#include "error.h"
#include "dNDArray.h"
#include "fNDArray.h"

#include "lo-specfun.h"

DEFUN (psi, args, ,
       doc: /* -*- texinfo -*-
@deftypefn  {} {} psi (@var{z})
@deftypefnx {} {} psi (@var{k}, @var{z})
Compute the psi (polygamma) function.

The polygamma functions are the @var{k}th derivative of the logarithm
of the gamma function.  If unspecified, @var{k} defaults to zero.  A value
of zero computes the digamma function, a value of 1, the trigamma function,
and so on.

The digamma function is defined:

@tex
$$
\Psi (z) = {d (log (\Gamma (z))) \over dx}
$$
@end tex
@ifnottex

@example
@group
psi (z) = d (log (gamma (z))) / dx
@end group
@end example

@end ifnottex

When computing the digamma function (when @var{k} equals zero), @var{z}
can have any value real or complex value.  However, for polygamma functions
(@var{k} higher than 0), @var{z} must be real and non-negative.

@seealso{gamma, gammainc, gammaln}
@end deftypefn */)
{
  int nargin = args.length ();

  if (nargin < 1 || nargin > 2)
    print_usage ();

  const octave_value oct_z = (nargin == 1) ? args(0) : args(1);
  const octave_idx_type k = (nargin == 1) ? 0 : args(0).xidx_type_value ("psi: K must be an integer");
  if (k < 0)
    error ("psi: K must be non-negative");

  octave_value retval;

  if (k == 0)
    {
#define FLOAT_BRANCH(T, A, M, E)                                \
      if (oct_z.is_ ## T ##_type ())                            \
        {                                                       \
          const A ## NDArray z = oct_z.M ## array_value ();     \
          A ## NDArray psi_z (z.dims ());                       \
                                                                \
          const E *zv = z.data ();                              \
          E *psi_zv = psi_z.fortran_vec ();                     \
          const octave_idx_type n = z.numel ();                 \
          for (octave_idx_type i = 0; i < n; i++)               \
            *psi_zv++ = octave::math::psi (*zv++);              \
                                                                \
          retval = psi_z;                                       \
        }

      if (oct_z.iscomplex ())
        {
          FLOAT_BRANCH(double, Complex, complex_, Complex)
          else FLOAT_BRANCH(single, FloatComplex, float_complex_, FloatComplex)
          else
            error ("psi: Z must be a floating point");
        }
      else
        {
          FLOAT_BRANCH(double, , , double)
          else FLOAT_BRANCH(single, Float, float_, float)
          else
            error ("psi: Z must be a floating point");
        }

#undef FLOAT_BRANCH
    }
  else
    {
      if (! oct_z.isreal ())
        error ("psi: Z must be real value for polygamma (K > 0)");

#define FLOAT_BRANCH(T, A, M, E)                                        \
      if (oct_z.is_ ## T ##_type ())                                    \
        {                                                               \
          const A ## NDArray z = oct_z.M ## array_value ();             \
          A ## NDArray psi_z (z.dims ());                               \
                                                                        \
          const E *zv = z.data ();                                      \
          E *psi_zv = psi_z.fortran_vec ();                             \
          const octave_idx_type n = z.numel ();                         \
          for (octave_idx_type i = 0; i < n; i++)                       \
            {                                                           \
              if (*zv < 0)                                              \
                error ("psi: Z must be non-negative for polygamma (K > 0)"); \
                                                                        \
              *psi_zv++ = octave::math::psi (k, *zv++);                 \
            }                                                           \
          retval = psi_z;                                               \
        }

      FLOAT_BRANCH(double, , , double)
      else FLOAT_BRANCH(single, Float, float_, float)
      else
        error ("psi: Z must be a floating point for polygamma (K > 0)");

#undef FLOAT_BRANCH
    }

  return retval;
}

/*
%!shared em
%! em = 0.577215664901532860606512090082402431042; # Euler-Mascheroni Constant

%!assert (psi (ones (7, 3, 5)), repmat (-em, [7 3 5]))
%!assert (psi ([0 1]), [-Inf -em])
%!assert (psi ([-20:1]), [repmat(-Inf, [1 21]) -em])
%!assert (psi (single ([0 1])), single ([-Inf -em]))

## Abramowitz and Stegun, page 258, eq 6.3.5
%!test
%! z = [-100:-1 1:200] ./ 10; # drop the 0
%! assert (psi (z + 1), psi (z) + 1 ./ z, eps*1000);

## Abramowitz and Stegun, page 258, eq 6.3.2
%!assert (psi (1), -em)

## Abramowitz and Stegun, page 258, eq 6.3.3
%!assert (psi (1/2), -em - 2 * log (2))

## The following tests are from Pascal Sebah and Xavier Gourdon (2002)
## "Introduction to the Gamma Function"

## Interesting identities of the digamma function, in section of 5.1.3
%!assert (psi (1/3), - em - (3/2) * log(3) - ((sqrt (3) / 6) * pi), eps*10)
%!assert (psi (1/4), - em -3 * log (2) - pi/2, eps*10)
%!assert (psi (1/6), - em -2 * log (2) - (3/2) * log (3) - ((sqrt (3) / 2) * pi), eps*10)

## First 6 zeros of the digamma function, in section of 5.1.5 (and also on
## Abramowitz and Stegun, page 258, eq 6.3.19)
%!assert (psi ( 1.46163214496836234126265954232572132846819620400644), 0, eps)
%!assert (psi (-0.504083008264455409258269304533302498955385182368579), 0, eps*2)
%!assert (psi (-1.573498473162390458778286043690434612655040859116846), 0, eps*2)
%!assert (psi (-2.610720868444144650001537715718724207951074010873480), 0, eps*10)
%!assert (psi (-3.635293366436901097839181566946017713948423861193530), 0, eps*10)
%!assert (psi (-4.653237761743142441714598151148207363719069416133868), 0, eps*100)

## Tests for complex values
%!shared z
%! z = [-100:-1 1:200] ./ 10; # drop the 0

## Abramowitz and Stegun, page 259 eq 6.3.10
%!assert (real (psi (i*z)), real (psi (1 - i*z)))

## Abramowitz and Stegun, page 259 eq 6.3.11
%!assert (imag (psi (i*z)), 1/2 .* 1./z + 1/2 * pi * coth (pi * z), eps *10)

## Abramowitz and Stegun, page 259 eq 6.3.12
%!assert (imag (psi (1/2 + i*z)), 1/2 * pi * tanh (pi * z), eps*10)

## Abramowitz and Stegun, page 259 eq 6.3.13
%!assert (imag (psi (1 + i*z)), - 1./(2*z) + 1/2 * pi * coth (pi * z), eps*10)

## Abramowitz and Stegun, page 260 eq 6.4.5
%!test
%! for z = 0:20
%!   assert (psi (1, z + 0.5),
%!           0.5 * (pi^2) - 4 * sum ((2*(1:z) -1) .^(-2)),
%!           eps*10);
%! endfor

## Abramowitz and Stegun, page 260 eq 6.4.6
%!test
%! z = 0.1:0.1:20;
%! for n = 0:8
%!   ## our precision goes down really quick when computing n is too high.
%!   assert (psi (n, z+1),
%!           psi (n, z) + ((-1)^n) * factorial (n) * (z.^(-n-1)), 0.1);
%! endfor

## Test input validation
%!error psi ()
%!error psi (1, 2, 3)
%!error <Z must be> psi ("non numeric")
%!error <K must be an integer> psi ({5.3}, 1)
%!error <K must be non-negative> psi (-5, 1)
%!error <Z must be non-negative for polygamma> psi (5, -1)
%!error <Z must be a floating point> psi (5, uint8 (-1))
%!error <Z must be real value for polygamma> psi (5, 5i)

*/