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use centralized file for copyright info for individual contributors * COPYRIGHT.md: New file. * In most other files, use "Copyright (C) YYYY-YYYY The Octave Project Developers" instead of tracking individual names in separate source files. The motivation is to reduce the effort required to update the notices each year. Until now, the Octave source files contained copyright notices that list individual contributors. I adopted these file-scope copyright notices because that is what everyone was doing 30 years ago in the days before distributed version control systems. But now, with many contributors and modern version control systems, having these file-scope copyright notices causes trouble when we update copyright years or refactor code. Over time, the file-scope copyright notices may become outdated as new contributions are made or code is moved from one file to another. Sometimes people contribute significant patches but do not add a line claiming copyright. Other times, people add a copyright notice for their contribution but then a later refactoring moves part or all of their contribution to another file and the notice is not moved with the code. As a practical matter, moving such notices is difficult -- determining what parts are due to a particular contributor requires a time-consuming search through the project history. Even managing the yearly update of copyright years is problematic. We have some contributors who are no longer living. Should we update the copyright dates for their contributions when we release new versions? Probably not, but we do still want to claim copyright for the project as a whole. To minimize the difficulty of maintaining the copyright notices, I would like to change Octave's sources to use what is described here: https://softwarefreedom.org/resources/2012/ManagingCopyrightInformation.html in the section "Maintaining centralized copyright notices": The centralized notice approach consolidates all copyright notices in a single location, usually a top-level file. This file should contain all of the copyright notices provided project contributors, unless the contribution was clearly insignificant. It may also credit -- without a copyright notice -- anyone who helped with the project but did not contribute code or other copyrighted material. This approach captures less information about contributions within individual files, recognizing that the DVCS is better equipped to record those details. As we mentioned before, it does have one disadvantage as compared to the file-scope approach: if a single file is separated from the distribution, the recipient won't see the contributors' copyright notices. But this can be easily remedied by including a single copyright notice in each file's header, pointing to the top-level file: Copyright YYYY-YYYY The Octave Project Developers See the COPYRIGHT file at the top-level directory of this distribution or at https://octave.org/COPYRIGHT.html. followed by the usual GPL copyright statement. For more background, see the discussion here: https://lists.gnu.org/archive/html/octave-maintainers/2020-01/msg00009.html Most files in the following directories have been skipped intentinally in this changeset: doc libgui/qterminal liboctave/external m4
author John W. Eaton <jwe@octave.org>
date Mon, 06 Jan 2020 15:38:17 -0500
parents f2bb4f2093b9
children 1891570abac8
line wrap: on
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## Copyright (C) 2000-2019 The Octave Project Developers
##
## See the file COPYRIGHT.md in the top-level directory of this distribution
## or <https://octave.org/COPYRIGHT.html/>.
##
##
## This file is part of Octave.
##
## Octave is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <https://www.gnu.org/licenses/>.

## -*- texinfo -*-
## @deftypefn  {} {@var{dx} =} gradient (@var{m})
## @deftypefnx {} {[@var{dx}, @var{dy}, @var{dz}, @dots{}] =} gradient (@var{m})
## @deftypefnx {} {[@dots{}] =} gradient (@var{m}, @var{s})
## @deftypefnx {} {[@dots{}] =} gradient (@var{m}, @var{x}, @var{y}, @var{z}, @dots{})
## @deftypefnx {} {[@dots{}] =} gradient (@var{f}, @var{x0})
## @deftypefnx {} {[@dots{}] =} gradient (@var{f}, @var{x0}, @var{s})
## @deftypefnx {} {[@dots{}] =} gradient (@var{f}, @var{x0}, @var{x}, @var{y}, @dots{})
##
## Calculate the gradient of sampled data or a function.
##
## If @var{m} is a vector, calculate the one-dimensional gradient of @var{m}.
## If @var{m} is a matrix the gradient is calculated for each dimension.
##
## @code{[@var{dx}, @var{dy}] = gradient (@var{m})} calculates the
## one-dimensional gradient for @var{x} and @var{y} direction if @var{m} is a
## matrix.  Additional return arguments can be use for multi-dimensional
## matrices.
##
## A constant spacing between two points can be provided by the @var{s}
## parameter.  If @var{s} is a scalar, it is assumed to be the spacing for all
## dimensions.  Otherwise, separate values of the spacing can be supplied by
## the @var{x}, @dots{} arguments.  Scalar values specify an equidistant
## spacing.  Vector values for the @var{x}, @dots{} arguments specify the
## coordinate for that dimension.  The length must match their respective
## dimension of @var{m}.
##
## At boundary points a linear extrapolation is applied.  Interior points
## are calculated with the first approximation of the numerical gradient
##
## @example
## y'(i) = 1/(x(i+1)-x(i-1)) * (y(i-1)-y(i+1)).
## @end example
##
## If the first argument @var{f} is a function handle, the gradient of the
## function at the points in @var{x0} is approximated using central difference.
## For example, @code{gradient (@@cos, 0)} approximates the gradient of the
## cosine function in the point @math{x0 = 0}.  As with sampled data, the
## spacing values between the points from which the gradient is estimated can
## be set via the @var{s} or @var{dx}, @var{dy}, @dots{} arguments.  By default
## a spacing of 1 is used.
## @seealso{diff, del2}
## @end deftypefn

## Author:  Kai Habel <kai.habel@gmx.de>
## Modified: David Bateman <dbateman@free.fr> Added NDArray support

function varargout = gradient (m, varargin)

  if (nargin < 1)
    print_usage ();
  endif

  nargout_with_ans = max (1,nargout);
  if (isnumeric (m))
    [varargout{1:nargout_with_ans}] = matrix_gradient (m, varargin{:});
  elseif (is_function_handle (m))
    [varargout{1:nargout_with_ans}] = handle_gradient (m, varargin{:});
  elseif (ischar (m))
    [varargout{1:nargout_with_ans}] = handle_gradient (str2func (m), ...
                                                       varargin{:});
  else
    error ("gradient: first input must be an array or a function");
  endif

endfunction

function varargout = matrix_gradient (m, varargin)

  transposed = false;
  if (isvector (m))
    ## make a row vector.
    transposed = (columns (m) == 1);
    m = m(:).';
  endif

  nd = ndims (m);
  sz = size (m);
  if (length (sz) > 1)
    tmp = sz(1); sz(1) = sz(2); sz(2) = tmp;
  endif

  if (nargin > 2 && nargin != nd + 1)
    print_usage ("gradient");
  endif

  ## cell d stores a spacing vector for each dimension
  d = cell (1, nd);
  if (nargin == 1)
    ## no spacing given - assume 1.0 for all dimensions
    for i = 1:nd
      d{i} = ones (sz(i) - 1, 1);
    endfor
  elseif (nargin == 2)
    if (isscalar (varargin{1}))
      ## single scalar value for all dimensions
      for i = 1:nd
        d{i} = varargin{1} * ones (sz(i) - 1, 1);
      endfor
    else
      ## vector for one-dimensional derivative
      d{1} = diff (varargin{1}(:));
    endif
  else
    ## have spacing value for each dimension
    if (length(varargin) != nd)
      error ("gradient: dimensions and number of spacing values do not match");
    endif
    for i = 1:nd
      if (isscalar (varargin{i}))
        d{i} = varargin{i} * ones (sz(i) - 1, 1);
      else
        d{i} = diff (varargin{i}(:));
      endif
    endfor
  endif

  m = shiftdim (m, 1);
  for i = 1:min (nd, nargout)
    mr = rows (m);
    mc = numel (m) / mr;
    Y = zeros (size (m), class (m));

    if (mr > 1)
      ## Top and bottom boundary.
      Y(1,:) = diff (m(1:2, :)) / d{i}(1);
      Y(mr,:) = diff (m(mr-1:mr, :) / d{i}(mr - 1));
    endif

    if (mr > 2)
      ## Interior points.
      Y(2:mr-1,:) = ((m(3:mr,:) - m(1:mr-2,:))
          ./ kron (d{i}(1:mr-2) + d{i}(2:mr-1), ones (1, mc)));
    endif

    ## turn multi-dimensional matrix in a way, that gradient
    ## along x-direction is calculated first then y, z, ...

    if (i == 1)
      varargout{i} = shiftdim (Y, nd - 1);
      m = shiftdim (m, nd - 1);
    elseif (i == 2)
      varargout{i} = Y;
      m = shiftdim (m, 2);
    else
      varargout{i} = shiftdim (Y, nd - i + 1);
      m = shiftdim (m, 1);
    endif
  endfor

  if (transposed)
    varargout{1} = varargout{1}.';
  endif

endfunction

function varargout = handle_gradient (f, p0, varargin)

  ## Input checking
  p0_size = size (p0);

  if (numel (p0_size) != 2)
    error ("gradient: the second input argument should either be a vector or a matrix");
  endif

  if (any (p0_size == 1))
    p0 = p0(:);
    dim = 1;
    num_points = numel (p0);
  else
    num_points = p0_size (1);
    dim = p0_size (2);
  endif

  if (length (varargin) == 0)
    delta = 1;
  elseif (length (varargin) == 1 || length (varargin) == dim)
    try
      delta = [varargin{:}];
    catch
      error ("gradient: spacing parameters must be scalars or a vector");
    end_try_catch
  else
    error ("gradient: incorrect number of spacing parameters");
  endif

  if (isscalar (delta))
    delta = repmat (delta, 1, dim);
  elseif (! isvector (delta))
    error ("gradient: spacing values must be scalars or a vector");
  endif

  ## Calculate the gradient
  p0 = mat2cell (p0, num_points, ones (1, dim));
  varargout = cell (1, dim);
  for d = 1:dim
    s = delta(d);
    df_dx = (f (p0{1:d-1}, p0{d}+s, p0{d+1:end})
           - f (p0{1:d-1}, p0{d}-s, p0{d+1:end})) ./ (2*s);
    if (dim == 1)
      varargout{d} = reshape (df_dx, p0_size);
    else
      varargout{d} = df_dx;
    endif
  endfor

endfunction


%!test
%! data = [1, 2, 4, 2];
%! dx = gradient (data);
%! dx2 = gradient (data, 0.25);
%! dx3 = gradient (data, [0.25, 0.5, 1, 3]);
%! assert (dx, [1, 3/2, 0, -2]);
%! assert (dx2, [4, 6, 0, -8]);
%! assert (dx3, [4, 4, 0, -1]);
%! assert (size_equal (data, dx));

%!test
%! [Y,X,Z,U] = ndgrid (2:2:8,1:5,4:4:12,3:5:30);
%! [dX,dY,dZ,dU] = gradient (X);
%! assert (all (dX(:) == 1));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (Y);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 2));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (Z);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 4));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (U);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 5));
%! assert (size_equal (dX, dY, dZ, dU, X, Y, Z, U));
%! [dX,dY,dZ,dU] = gradient (U, 5.0);
%! assert (all (dU(:) == 1));
%! [dX,dY,dZ,dU] = gradient (U, 1.0, 2.0, 3.0, 2.5);
%! assert (all (dU(:) == 2));

%!test
%! [Y,X,Z,U] = ndgrid (2:2:8,1:5,4:4:12,3:5:30);
%! [dX,dY,dZ,dU] = gradient (X+j*X);
%! assert (all (dX(:) == 1+1j));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (Y-j*Y);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 2-j*2));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (Z+j*1);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 4));
%! assert (all (dU(:) == 0));
%! [dX,dY,dZ,dU] = gradient (U-j*1);
%! assert (all (dX(:) == 0));
%! assert (all (dY(:) == 0));
%! assert (all (dZ(:) == 0));
%! assert (all (dU(:) == 5));
%! assert (size_equal (dX, dY, dZ, dU, X, Y, Z, U));
%! [dX,dY,dZ,dU] = gradient (U, 5.0);
%! assert (all (dU(:) == 1));
%! [dX,dY,dZ,dU] = gradient (U, 1.0, 2.0, 3.0, 2.5);
%! assert (all (dU(:) == 2));

%!test
%! x = 0:10;
%! f = @cos;
%! df_dx = @(x) -sin (x);
%! assert (gradient (f, x), df_dx (x), 0.2);
%! assert (gradient (f, x, 0.5), df_dx (x), 0.1);

%!test
%! xy = reshape (1:10, 5, 2);
%! f = @(x,y) sin (x) .* cos (y);
%! df_dx = @(x, y) cos (x) .* cos (y);
%! df_dy = @(x, y) -sin (x) .* sin (y);
%! [dx, dy] = gradient (f, xy);
%! assert (dx, df_dx (xy (:, 1), xy (:, 2)), 0.1);
%! assert (dy, df_dy (xy (:, 1), xy (:, 2)), 0.1);