view scripts/statistics/spearman.m @ 28886:d8318c12d903

test: remove unnecessary BIST tests in m-files checking for excessive number of inputs. Remove BIST tests now that interpreter enforces calling function with no more than the number of arguments defined in the function prototype. * makeUniqueStrings.m, makeValidName.m, base64decode.m, base64encode.m, record.m, sound.m, soundsc.m, acosd.m, acot.m, acotd.m, acoth.m, acsc.m, acscd.m, acsch.m, asec.m, asecd.m, asech.m, asind.m, atan2d.m, atand.m, cosd.m, cot.m, cotd.m, coth.m, csc.m, cscd.m, csch.m, sec.m, secd.m, sech.m, sind.m, tand.m, accumdim.m, bincoeff.m, bitget.m, bitset.m, cell2mat.m, circshift.m, cplxpair.m, cumtrapz.m, deg2rad.m, flip.m, fliplr.m, flipud.m, int2str.m, interpft.m, logspace.m, num2str.m, postpad.m, prepad.m, rad2deg.m, rot90.m, rotdim.m, shift.m, subsindex.m, trapz.m, rotx.m, roty.m, rotz.m, getappdata.m, getpixelposition.m, guidata.m, isappdata.m, waitforbuttonpress.m, __gripe_missing_component__.m, bessel.m, hsv2rgb.m, ind2gray.m, rgb2gray.m, rgb2hsv.m, rgbplot.m, fileread.m, javachk.m, usejava.m, findstr.m, genvarname.m, isdir.m, vectorize.m, cond.m, cross.m, duplication_matrix.m, expm.m, isbanded.m, isdefinite.m, isdiag.m, ishermitian.m, issymmetric.m, istril.m, istriu.m, trace.m, vech.m, vecnorm.m, cast.m, citation.m, compare_versions.m, grabcode.m, inputname.m, isfile.m, isfolder.m, ismac.m, ispc.m, isunix.m, list_primes.m, methods.m, news.m, open.m, run.m, swapbytes.m, tar.m, verLessThan.m, zip.m, odeget.m, optimget.m, stemleaf.m, allchild.m, ancestor.m, close.m, groot.m, hgsave.m, isaxes.m, isfigure.m, isgraphics.m, ishandle.m, isprop.m, linkaxes.m, rotate.m, saveas.m, conv.m, poly.m, polyint.m, polyreduce.m, ppval.m, roots.m, addpref.m, getpref.m, ispref.m, rmpref.m, setpref.m, profile.m, profshow.m, powerset.m, autoreg_matrix.m, bartlett.m, blackman.m, detrend.m, fftconv.m, fftfilt.m, fftshift.m, hamming.m, hanning.m, ifftshift.m, sinewave.m, spectral_adf.m, spectral_xdf.m, unwrap.m, nonzeros.m, spconvert.m, sprand.m, sprandn.m, beta.m, betainc.m, betaln.m, cosint.m, expint.m, factorial.m, legendre.m, nchoosek.m, nthroot.m, perms.m, pow2.m, primes.m, reallog.m, realpow.m, realsqrt.m, sinint.m, hankel.m, hilb.m, invhilb.m, magic.m, pascal.m, toeplitz.m, vander.m, wilkinson.m, center.m, corr.m, cov.m, discrete_cdf.m, discrete_inv.m, discrete_pdf.m, empirical_cdf.m, empirical_inv.m, empirical_pdf.m, iqr.m, kendall.m, kurtosis.m, mad.m, meansq.m, median.m, moment.m, prctile.m, quantile.m, range.m, run_count.m, skewness.m, spearman.m, statistics.m, std.m, var.m, base2dec.m, bin2dec.m, blanks.m, dec2base.m, dec2bin.m, dec2hex.m, endsWith.m, erase.m, hex2dec.m, index.m, isletter.m, isstring.m, isstrprop.m, mat2str.m, ostrsplit.m, rindex.m, startsWith.m, strtrunc.m, substr.m, fail.m, addtodate.m, asctime.m, ctime.m, date.m, datestr.m, eomday.m, etime.m, is_leap_year.m, now.m: remove unnecessary BIST tests in m-files checking for excessive number of inputs.
author Rik <rik@octave.org>
date Fri, 09 Oct 2020 13:28:53 -0700
parents 28de41192f3c
children 7854d5752dd2
line wrap: on
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########################################################################
##
## Copyright (C) 1995-2020 The Octave Project Developers
##
## See the file COPYRIGHT.md in the top-level directory of this
## distribution or <https://octave.org/copyright/>.
##
## This file is part of Octave.
##
## Octave is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING.  If not, see
## <https://www.gnu.org/licenses/>.
##
########################################################################

## -*- texinfo -*-
## @deftypefn  {} {} spearman (@var{x})
## @deftypefnx {} {} spearman (@var{x}, @var{y})
## @cindex Spearman's Rho
## Compute Spearman's rank correlation coefficient
## @tex
## $\rho$.
## @end tex
## @ifnottex
## @var{rho}.
## @end ifnottex
##
## For two data vectors @var{x} and @var{y}, Spearman's
## @tex
## $\rho$
## @end tex
## @ifnottex
## @var{rho}
## @end ifnottex
## is the correlation coefficient of the ranks of @var{x} and @var{y}.
##
## If @var{x} and @var{y} are drawn from independent distributions,
## @tex
## $\rho$
## @end tex
## @ifnottex
## @var{rho}
## @end ifnottex
## has zero mean and variance
## @tex
## $1 / (N - 1)$,
## @end tex
## @ifnottex
## @code{1 / (N - 1)},
## @end ifnottex
## where @math{N} is the length of the @var{x} and @var{y} vectors, and is
## asymptotically normally distributed.
##
## @code{spearman (@var{x})} is equivalent to
## @code{spearman (@var{x}, @var{x})}.
## @seealso{ranks, kendall}
## @end deftypefn

function rho = spearman (x, y = [])

  if (nargin < 1)
    print_usage ();
  endif

  if (   ! (isnumeric (x) || islogical (x))
      || ! (isnumeric (y) || islogical (y)))
    error ("spearman: X and Y must be numeric matrices or vectors");
  endif

  if (ndims (x) != 2 || ndims (y) != 2)
    error ("spearman: X and Y must be 2-D matrices or vectors");
  endif

  if (isrow (x))
    x = x.';
  endif

  if (nargin == 1)
    rho = corr (ranks (x));
  else
    if (isrow (y))
      y = y.';
    endif
    if (rows (x) != rows (y))
      error ("spearman: X and Y must have the same number of observations");
    endif
    rho = corr (ranks (x), ranks (y));
  endif

  ## Restore class cleared by ranks
  if (isa (x, "single") || isa (y, "single"))
    rho = single (rho);
  endif

endfunction


%!test
%! x = 1:10;
%! y = exp (x);
%! assert (spearman (x,y), 1, 5*eps);
%! assert (spearman (x,-y), -1, 5*eps);

%!assert (spearman ([1 2 3], [-1 1 -2]), -0.5, 5*eps)

## Test input validation
%!error <Invalid call> spearman ()
%!error spearman (['A'; 'B'])
%!error spearman (ones (1,2), {1, 2})
%!error spearman (ones (2,2,2))
%!error spearman (ones (2,2), ones (2,2,2))
%!error spearman (ones (2,2), ones (3,2))