view scripts/sparse/bicg.m @ 14363:f3d52523cde1

Use Octave coding conventions in all m-file %!test blocks * wavread.m, acosd.m, acot.m, acotd.m, acoth.m, acsc.m, acscd.m, acsch.m, asec.m, asecd.m, asech.m, asind.m, atand.m, cosd.m, cot.m, cotd.m, coth.m, csc.m, cscd.m, csch.m, sec.m, secd.m, sech.m, sind.m, tand.m, accumarray.m, accumdim.m, bitcmp.m, bitget.m, bitset.m, blkdiag.m, cart2pol.m, cart2sph.m, celldisp.m, chop.m, circshift.m, colon.m, common_size.m, cplxpair.m, cumtrapz.m, curl.m, dblquad.m, deal.m, divergence.m, flipdim.m, fliplr.m, flipud.m, genvarname.m, gradient.m, idivide.m, int2str.m, interp1.m, interp1q.m, interp2.m, interp3.m, interpft.m, interpn.m, isa.m, isdir.m, isequal.m, isequalwithequalnans.m, issquare.m, logspace.m, nargchk.m, narginchk.m, nargoutchk.m, nextpow2.m, nthargout.m, num2str.m, pol2cart.m, polyarea.m, postpad.m, prepad.m, profile.m, profshow.m, quadgk.m, quadv.m, randi.m, rat.m, repmat.m, rot90.m, rotdim.m, shift.m, shiftdim.m, sph2cart.m, structfun.m, trapz.m, triplequad.m, convhull.m, dsearch.m, dsearchn.m, griddata3.m, griddatan.m, rectint.m, tsearchn.m, __makeinfo__.m, doc.m, get_first_help_sentence.m, help.m, type.m, unimplemented.m, which.m, imread.m, imwrite.m, dlmwrite.m, fileread.m, is_valid_file_id.m, strread.m, textread.m, textscan.m, commutation_matrix.m, cond.m, condest.m, cross.m, duplication_matrix.m, expm.m, housh.m, isdefinite.m, ishermitian.m, issymmetric.m, logm.m, normest.m, null.m, onenormest.m, orth.m, planerot.m, qzhess.m, rank.m, rref.m, trace.m, vech.m, ans.m, bincoeff.m, bug_report.m, bzip2.m, comma.m, compare_versions.m, computer.m, edit.m, fileparts.m, fullfile.m, getfield.m, gzip.m, info.m, inputname.m, isappdata.m, isdeployed.m, ismac.m, ispc.m, isunix.m, list_primes.m, ls.m, mexext.m, namelengthmax.m, news.m, orderfields.m, paren.m, recycle.m, rmappdata.m, semicolon.m, setappdata.m, setfield.m, substruct.m, symvar.m, ver.m, version.m, warning_ids.m, xor.m, fminbnd.m, fsolve.m, fzero.m, lsqnonneg.m, optimset.m, pqpnonneg.m, sqp.m, matlabroot.m, __gnuplot_drawnow__.m, __plt_get_axis_arg__.m, ancestor.m, cla.m, clf.m, close.m, colorbar.m, colstyle.m, comet3.m, contourc.m, figure.m, gca.m, gcbf.m, gcbo.m, gcf.m, ginput.m, graphics_toolkit.m, gtext.m, hggroup.m, hist.m, hold.m, isfigure.m, ishghandle.m, ishold.m, isocolors.m, isonormals.m, isosurface.m, isprop.m, legend.m, line.m, loglog.m, loglogerr.m, meshgrid.m, ndgrid.m, newplot.m, orient.m, patch.m, plot3.m, plotyy.m, __print_parse_opts__.m, quiver3.m, refreshdata.m, ribbon.m, semilogx.m, semilogxerr.m, semilogy.m, stem.m, stem3.m, subplot.m, title.m, uigetfile.m, view.m, whitebg.m, compan.m, conv.m, deconv.m, mkpp.m, mpoles.m, pchip.m, poly.m, polyaffine.m, polyder.m, polyfit.m, polygcd.m, polyint.m, polyout.m, polyval.m, polyvalm.m, ppder.m, ppint.m, ppjumps.m, ppval.m, residue.m, roots.m, spline.m, intersect.m, ismember.m, powerset.m, setdiff.m, setxor.m, union.m, unique.m, autoreg_matrix.m, bartlett.m, blackman.m, detrend.m, fftconv.m, fftfilt.m, fftshift.m, freqz.m, hamming.m, hanning.m, ifftshift.m, sinc.m, sinetone.m, sinewave.m, unwrap.m, bicg.m, bicgstab.m, gmres.m, gplot.m, nonzeros.m, pcg.m, pcr.m, spaugment.m, spconvert.m, spdiags.m, speye.m, spfun.m, spones.m, sprand.m, sprandsym.m, spstats.m, spy.m, svds.m, treelayout.m, bessel.m, beta.m, betaln.m, factor.m, factorial.m, isprime.m, lcm.m, legendre.m, nchoosek.m, nthroot.m, perms.m, pow2.m, primes.m, reallog.m, realpow.m, realsqrt.m, hadamard.m, hankel.m, hilb.m, invhilb.m, magic.m, rosser.m, vander.m, __finish__.m, center.m, cloglog.m, corr.m, cov.m, gls.m, histc.m, iqr.m, kendall.m, kurtosis.m, logit.m, mahalanobis.m, mean.m, meansq.m, median.m, mode.m, moment.m, ols.m, ppplot.m, prctile.m, probit.m, quantile.m, range.m, ranks.m, run_count.m, runlength.m, skewness.m, spearman.m, statistics.m, std.m, table.m, var.m, zscore.m, betacdf.m, betainv.m, betapdf.m, betarnd.m, binocdf.m, binoinv.m, binopdf.m, binornd.m, cauchy_cdf.m, cauchy_inv.m, cauchy_pdf.m, cauchy_rnd.m, chi2cdf.m, chi2inv.m, chi2pdf.m, chi2rnd.m, discrete_cdf.m, discrete_inv.m, discrete_pdf.m, discrete_rnd.m, empirical_cdf.m, empirical_inv.m, empirical_pdf.m, empirical_rnd.m, expcdf.m, expinv.m, exppdf.m, exprnd.m, fcdf.m, finv.m, fpdf.m, frnd.m, gamcdf.m, gaminv.m, gampdf.m, gamrnd.m, geocdf.m, geoinv.m, geopdf.m, geornd.m, hygecdf.m, hygeinv.m, hygepdf.m, hygernd.m, kolmogorov_smirnov_cdf.m, laplace_cdf.m, laplace_inv.m, laplace_pdf.m, laplace_rnd.m, logistic_cdf.m, logistic_inv.m, logistic_pdf.m, logistic_rnd.m, logncdf.m, logninv.m, lognpdf.m, lognrnd.m, nbincdf.m, nbininv.m, nbinpdf.m, nbinrnd.m, normcdf.m, norminv.m, normpdf.m, normrnd.m, poisscdf.m, poissinv.m, poisspdf.m, poissrnd.m, stdnormal_cdf.m, stdnormal_inv.m, stdnormal_pdf.m, stdnormal_rnd.m, tcdf.m, tinv.m, tpdf.m, trnd.m, unidcdf.m, unidinv.m, unidpdf.m, unidrnd.m, unifcdf.m, unifinv.m, unifpdf.m, unifrnd.m, wblcdf.m, wblinv.m, wblpdf.m, wblrnd.m, kolmogorov_smirnov_test.m, kruskal_wallis_test.m, base2dec.m, bin2dec.m, blanks.m, cstrcat.m, deblank.m, dec2base.m, dec2bin.m, dec2hex.m, findstr.m, hex2dec.m, index.m, isletter.m, mat2str.m, rindex.m, str2num.m, strcat.m, strjust.m, strmatch.m, strsplit.m, strtok.m, strtrim.m, strtrunc.m, substr.m, validatestring.m, demo.m, example.m, fail.m, speed.m, addtodate.m, asctime.m, clock.m, ctime.m, date.m, datenum.m, datetick.m, datevec.m, eomday.m, etime.m, is_leap_year.m, now.m: Use Octave coding conventions in all m-file %!test blocks
author Rik <octave@nomad.inbox5.com>
date Mon, 13 Feb 2012 07:29:44 -0800
parents 7277fe922e99
children 3edba8b5f430
line wrap: on
line source

## Copyright (C) 2006   Sylvain Pelissier   <sylvain.pelissier@gmail.com>
## Copyright (C) 2012   Carlo de Falco
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation; either version 2 of the License, or
## (at your option) any later version.
##
## This program is distributed in the hope that it will be useful,
## but WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with this program; If not, see <http://www.gnu.org/licenses/>.

## -*- texinfo -*-
##
## @deftypefn  {Function File} {@var{x} =} bicg (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{M1}, @var{M2}, @var{x0})
## @deftypefnx {Function File} {@var{x} =} bicg (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{P})
## @deftypefnx {Function File} {[@var{x}, @var{flag}, @var{relres}, @var{iter}, @var{resvec}] =} bicg (@var{A}, @var{b}, @dots{})
## Solve @code{A x = b} using the Bi-conjugate gradient iterative method.
##
## @itemize @minus
## @item @var{rtol} is the relative tolerance, if not given
## or set to [] the default value 1e-6 is used.
##
## @item @var{maxit} the maximum number of outer iterations,
## if not given or set to [] the default value
## @code{min (20, numel (b))} is used.
##
## @item @var{x0} the initial guess, if not given or set to []
## the default value @code{zeros (size (b))} is used.
## @end itemize
##
## @var{A} can be passed as a matrix or as a function handle or
## inline function @code{f} such that @code{f(x, "notransp") = A*x}
## and @code{f(x, "transp") = A'*x}.
##
## The preconditioner @var{P} is given as @code{P = M1 * M2}.
## Both @var{M1} and @var{M2} can be passed as a matrix or as
## a function handle or inline function @code{g} such that
## @code{g(x, "notransp") = M1 \ x} or @code{g(x, "notransp") = M2 \ x} and
## @code{g(x, "transp") = M1' \ x} or @code{g(x, "transp") = M2' \ x}.
##
## If called with more than one output parameter
##
## @itemize @minus
## @item @var{flag} indicates the exit status:
## @itemize @minus
## @item 0: iteration converged to the within the chosen tolerance
##
## @item 1: the maximum number of iterations was reached before convergence
##
## @item 3: the algorithm reached stagnation
## @end itemize
## (the value 2 is unused but skipped for compatibility).
##
## @item @var{relres} is the final value of the relative residual.
##
## @item @var{iter} is the number of iterations performed.
##
## @item @var{resvec} is a vector containing the relative residual at each iteration.
## @end itemize
##
## @seealso{bicgstab, cgs, gmres, pcg}
##
## @end deftypefn


function [x, flag, res1, k, resvec] = bicg (A, b, tol, maxit, M1, M2, x0)

  if (nargin >= 2 && isvector (full (b)))

    if (ischar (A))
      fun = str2func (A);
      Ax  = @(x) feval (fun, x, "notransp");
      Atx = @(x) feval (fun, x, "transp");
    elseif (ismatrix (A))
      Ax  = @(x) A  * x;
      Atx = @(x) A' * x;
    elseif (isa (A, "function_handle"))
      Ax  = @(x) feval (A, x, "notransp");
      Atx = @(x) feval (A, x, "transp");
    else
      error (["bicg: first argument is expected to " ...
              "be a function or a square matrix"]);
    endif

    if (nargin < 3 || isempty (tol))
      tol = 1e-6;
    endif

    if (nargin < 4 || isempty (maxit))
      maxit = min (rows (b), 20);
    endif

    if (nargin < 5 || isempty (M1))
      M1m1x = @(x, ignore) x;
      M1tm1x = M1m1x;
    elseif (ischar (M1))
      fun = str2func (M1);
      M1m1x  = @(x) feval (fun, x, "notransp");
      M1tm1x = @(x) feval (fun, x, "transp");
    elseif (ismatrix (M1))
      M1m1x  = @(x) M1  \ x;
      M1tm1x = @(x) M1' \ x;
    elseif (isa (M1, "function_handle"))
      M1m1x  = @(x) feval (M1, x, "notransp");
      M1tm1x = @(x) feval (M1, x, "transp");
    else
      error (["bicg: preconditioner is expected to " ...
              "be a function or matrix"]);
    endif

    if (nargin < 6 || isempty (M2))
      M2m1x = @(x, ignore) x;
      M2tm1x = M2m1x;
    elseif (ischar (M2))
      fun = str2func (M2);
      M2m1x  = @(x) feval (fun, x, "notransp");
      M2tm1x = @(x) feval (fun, x, "transp");
    elseif (ismatrix (M2))
      M2m1x  = @(x) M2  \ x;
      M2tm1x = @(x) M2' \ x;
    elseif (isa (M2, "function_handle"))
      M2m1x  = @(x) feval (M2, x, "notransp");
      M2tm1x = @(x) feval (M2, x, "transp");
    else
      error (["bicg: preconditioner is expected to " ...
              "be a function or matrix"]);
    endif

    Pm1x  = @(x) M2m1x  (M1m1x (x));
    Ptm1x = @(x) M1tm1x (M2tm1x (x));

    if (nargin < 7 || isempty (x0))
      x0 = zeros (size (b));
    endif

    y = x = x0;
    c = b;

    r0 = b - Ax (x);
    s0 = c - Atx (y);

    d = Pm1x (r0);
    f = Ptm1x (s0);

    bnorm = norm (b);
    res0  = Inf;

    if (any (r0 != 0))

      for k = 1:maxit

        a  = (s0' * Pm1x (r0)) ./ (f' * Ax (d));

        x += a * d;
        y += conj (a) * f;

        r1 = r0 - a * Ax (d);
        s1 = s0 - conj (a) * Atx (f);

        beta = (s1' * Pm1x (r1)) ./ (s0' * Pm1x (r0));

        d = Pm1x (r1) + beta * d;
        f = Ptm1x (s1) + conj (beta) * f;

        r0 = r1;
        s0 = s1;

        res1 = norm (b - Ax (x)) / bnorm;
        if (res1 < tol)
          flag = 0;
          if (nargout < 2)
            printf ("bicg converged at iteration %i ", k);
            printf ("to a solution with relative residual %e\n", res1);
          endif
          break;
        endif

        if (res0 <= res1)
          flag = 3;
          printf ("bicg stopped at iteration %i ", k);
          printf ("without converging to the desired tolerance %e\n", tol);
          printf ("because the method stagnated.\n");
          printf ("The iterate returned (number %i) ", k-1);
          printf ("has relative residual %e\n", res0);
          break
        endif
        res0 = res1;
        if (nargout > 4)
          resvec(k) = res0;
        endif
      endfor

      if (k == maxit)
        flag = 1;
        printf ("bicg stopped at iteration %i ", maxit);
        printf ("without converging to the desired tolerance %e\n", tol);
        printf ("because the maximum number of iterations was reached. ");
        printf ("The iterate returned (number %i) has ", maxit);
        printf ("relative residual %e\n", res1);
      endif

    else
      flag = 0;
      if (nargout < 2)
        printf ("bicg converged after 0 interations\n");
      endif
    endif

  else
    print_usage ();
  endif

endfunction;


%!test
%! n = 100;
%! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n);
%! b = sum (A, 2);
%! tol = 1e-8;
%! maxit = 15;
%! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n);
%! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n);
%! [x, flag, relres, iter, resvec] = bicg (A, b, tol, maxit, M1, M2);
%! assert (x, ones (size (b)), 1e-7);

%!function y = afun (x, t, a)
%!  switch t
%!   case "notransp"
%!     y = a * x;
%!   case "transp"
%!     y = a' * x;
%!  endswitch
%!endfunction
%!
%!test
%! n = 100;
%! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n);
%! b = sum (A, 2);
%! tol = 1e-8;
%! maxit = 15;
%! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n);
%! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n);
%!
%! [x, flag, relres, iter, resvec] = bicg (@(x, t) afun (x, t, A),
%!                                         b, tol, maxit, M1, M2);
%! assert (x, ones (size (b)), 1e-7);

%!test
%! n = 100;
%! tol = 1e-8;
%! a = sprand (n, n, .1);
%! A = a' * a + 100 * eye (n);
%! b = sum (A, 2);
%! [x, flag, relres, iter, resvec] = bicg (A, b, tol, [], diag (diag (A)));
%! assert (x, ones (size (b)), 1e-7);