Mercurial > fem-fenics-eugenio
annotate src/assemble.cc @ 184:66071811eef8
Improve the documentation for the pkg releae.
author | gedeone-octave <marcovass89@hotmail.it> |
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date | Sat, 09 Nov 2013 10:44:51 +0000 |
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1 /* |
151 | 2 Copyright (C) 2013 Marco Vassallo <gedeone-octave@users.sourceforge.net> |
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3 |
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4 This program is free software; you can redistribute it and/or modify it under |
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5 the terms of the GNU General Public License as published by the Free Software |
151 | 6 Foundation; either version 3 of the License, or (at your option) any later |
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7 version. |
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8 |
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9 This program is distributed in the hope that it will be useful, but WITHOUT |
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10 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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11 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more |
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12 details. |
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13 |
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14 You should have received a copy of the GNU General Public License along with |
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15 this program; if not, see <http://www.gnu.org/licenses/>. |
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16 */ |
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17 |
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18 #include "form.h" |
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19 #include "boundarycondition.h" |
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20 |
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21 DEFUN_DLD (assemble, args, nargout, |
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22 "-*- texinfo -*-\n\ |
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23 @deftypefn {Function File} {[@var{A}], [@var{x}(Optional)]} = \ |
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24 assemble (@var{form_a}, @var{DirichletBC}) \n\ |
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25 Construct the discretization of a Form and apply essential BC.\n\ |
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26 The input arguments are\n\ |
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27 @itemize @bullet\n\ |
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28 @item @var{form_a} which is the form to assemble.\n\ |
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29 It can be a form of rank 2 (BilinearForm or JacobianForm), \ |
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30 a form of rank 1 (LinearForm or ResidualForm) or a form \ |
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31 of rank 0 (Functional).\n\ |
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32 @item @var{DirichletBC} represents the optional BC applied to \ |
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33 the system. \n\ |
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34 @end itemize \n\ |
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35 The output @var{A} is a discretized representation of the @var{form_a}:\n\ |
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36 @itemize @bullet\n\ |
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37 @item @var{A} is a sparse Matrix if @var{form_a} is a bilinear form\n\ |
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38 @item @var{A} is a Vector if @var{form_a} is a linear form\n\ |
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39 @item @var{A} is a Double if @var{form_a} is a functional\n\ |
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40 @end itemize \n\ |
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41 If boundary condition has to be applied to a vector for a nonlinear problem \ |
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42 then it should be provide as 2nd argument and it will be given back \ |
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43 as the second output argument. For an example of this situation, please refer \ |
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44 to the HyperElasticity example. \n\ |
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45 @seealso{BilinearForm, LinearForm, ResidualForm, JacobianForm, Functional}\n\ |
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46 @end deftypefn") |
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47 { |
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48 int nargin = args.length (); |
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49 octave_value_list retval; |
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50 |
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51 if (! boundarycondition_type_loaded) |
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52 { |
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53 boundarycondition::register_type (); |
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54 boundarycondition_type_loaded = true; |
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55 mlock (); |
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56 } |
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57 |
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58 if (! form_type_loaded) |
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59 { |
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60 form::register_type (); |
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61 form_type_loaded = true; |
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62 mlock (); |
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63 } |
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64 |
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65 if (nargout == 1) |
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66 { |
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67 if (nargin < 1) |
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68 print_usage (); |
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69 else |
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70 { |
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71 if (args(0).type_id () == form::static_type_id ()) |
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72 { |
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73 const form & frm = static_cast<const form&> (args(0).get_rep ()); |
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74 |
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75 if (! error_state) |
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76 { |
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77 const dolfin::Form & a = frm.get_form (); |
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78 a.check (); |
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79 |
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80 if (a.rank () == 2) |
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81 { |
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82 dolfin::parameters["linear_algebra_backend"] = "uBLAS"; |
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83 dolfin::Matrix A; |
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84 dolfin::assemble (A, a); |
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85 |
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86 for (std::size_t i = 1; i < nargin; ++i) |
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87 { |
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88 if (args(i).type_id () == |
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89 boundarycondition::static_type_id ()) |
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90 { |
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91 const boundarycondition & bc |
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92 = static_cast<const boundarycondition&> |
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93 (args(i).get_rep ()); |
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94 |
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95 const |
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96 std::vector<boost::shared_ptr |
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97 <const dolfin::DirichletBC> > |
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98 & pbc = bc.get_bc (); |
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99 |
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100 for (std::size_t j = 0; j < pbc.size (); ++j) |
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101 pbc[j]->apply(A); |
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102 } |
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103 else |
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104 error ("assemble: unknown argument type"); |
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105 } |
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106 |
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107 // Get capacity of the dolfin sparse matrix |
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108 boost::tuples::tuple<const std::size_t*, |
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109 const std::size_t*, |
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110 const double*, int> |
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111 aa = A.data (); |
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112 |
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113 int nnz = aa.get<3> (); |
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114 std::size_t nr = A.size (0), nc = A.size (1); |
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115 std::vector<double> data_tmp; |
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116 std::vector<std::size_t> cidx_tmp; |
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117 |
167
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118 dim_vector dims (nnz, 1); |
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119 octave_idx_type nz = 0, ii = 0; |
172
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120 Array<octave_idx_type> |
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121 ridx (dims, 0), |
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122 cidx (dims, 0); |
167
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123 Array<double> data (dims, 0); |
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124 |
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125 octave_idx_type* orow = ridx.fortran_vec (); |
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126 octave_idx_type* oc = cidx.fortran_vec (); |
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127 double* ov = data.fortran_vec (); |
97
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128 |
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129 for (std::size_t i = 0; i < nr; ++i) |
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130 { |
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131 A.getrow (i, cidx_tmp, data_tmp); |
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132 nz += cidx_tmp.size (); |
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133 |
172
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134 for (octave_idx_type j = 0; |
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135 j < cidx_tmp.size (); ++j) |
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136 { |
167
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137 orow [ii + j] = i; |
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138 oc [ii + j] = cidx_tmp [j]; |
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139 ov [ii + j] = data_tmp [j]; |
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140 } |
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141 |
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142 ii = nz; |
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143 } |
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144 |
167
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145 dims(0) = ii; |
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146 ridx.resize (dims); |
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147 cidx.resize (dims); |
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148 data.resize (dims); |
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149 |
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150 SparseMatrix sm (data, ridx, cidx, nr, nc); |
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151 retval(0) = sm; |
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152 } |
116
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153 |
97
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154 else if (a.rank () == 1) |
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155 { |
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156 dolfin::Vector A; |
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157 dolfin::assemble (A, a); |
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158 |
97
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159 for (std::size_t i = 1; i < nargin; ++i) |
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160 { |
172
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161 if (args(i).type_id () == |
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162 boundarycondition::static_type_id ()) |
97
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163 { |
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164 const boundarycondition & bc |
172
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165 = static_cast<const boundarycondition&> |
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166 (args(i).get_rep ()); |
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167 |
172
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168 const std::vector<boost::shared_ptr |
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169 <const dolfin::DirichletBC> > |
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170 & pbc = bc.get_bc (); |
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171 |
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172 for (std::size_t j = 0; j < pbc.size (); ++j) |
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173 pbc[j]->apply(A); |
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174 } |
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175 else |
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176 error ("assemble: unknown argument type"); |
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177 } |
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178 |
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179 dim_vector dims; |
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180 dims.resize (2); |
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181 dims(0) = A.size (); |
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182 dims(1) = 1; |
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183 Array<double> myb (dims); |
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184 |
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185 for (std::size_t i = 0; i < A.size (); ++i) |
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186 myb.xelem (i) = A[i]; |
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187 |
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188 retval(0) = myb; |
91
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189 } |
116
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190 |
108
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191 else if (a.rank () == 0) |
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192 { |
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193 double b = dolfin::assemble (a); |
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194 retval(0) = octave_value (b); |
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195 } |
91
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196 |
97
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197 else |
116
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198 error ("assemble: unknown form size"); |
91
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199 } |
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200 } |
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201 } |
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202 } |
97
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203 else if (nargout == 2) |
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204 { |
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205 if (nargin < 2) |
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|
206 print_usage (); |
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|
207 else |
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208 { |
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209 if (args(0).type_id () == form::static_type_id ()) |
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210 { |
172
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211 const form & frm = |
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212 static_cast<const form &> (args(0).get_rep ()); |
97
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213 const Array<double> myx = args(1).array_value (); |
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214 |
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215 if (! error_state) |
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216 { |
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217 const dolfin::Form & a = frm.get_form (); |
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218 a.check (); |
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219 |
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220 if (a.rank () == 1) |
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221 { |
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222 dolfin::Vector A; |
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223 dolfin::assemble (A, a); |
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224 |
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225 dolfin::Vector x (myx.length ()); |
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226 for (std::size_t i = 0; i < myx.length (); ++i) |
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227 x.setitem (i, myx.xelem (i)); |
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228 |
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229 for (std::size_t i = 2; i < nargin; ++i) |
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230 { |
172
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231 if (args(i).type_id () == |
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232 boundarycondition::static_type_id ()) |
97
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233 { |
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234 const boundarycondition & bc |
172
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235 = static_cast<const boundarycondition&> |
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236 (args(i).get_rep ()); |
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237 |
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238 const std::vector<boost::shared_ptr |
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239 <const dolfin::DirichletBC> > |
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240 & pbc = bc.get_bc (); |
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241 |
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242 for (std::size_t j = 0; |
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243 j < pbc.size (); ++j) |
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244 pbc[j]->apply(A, x); |
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245 } |
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246 else |
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247 error ("assemble: unknown argument type"); |
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248 } |
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249 |
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250 dim_vector dims; |
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251 dims.resize (2); |
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252 dims(0) = A.size (); |
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253 dims(1) = 1; |
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254 Array<double> myb (dims), myc (dims); |
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255 |
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256 for (std::size_t i = 0; i < A.size (); ++i) |
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257 { |
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258 myb.xelem (i) = A[i]; |
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259 myc.xelem (i) = x[i]; |
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260 } |
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261 |
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262 retval(0) = myb; |
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263 retval(1) = myc; |
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264 } |
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265 |
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266 else |
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267 error ("assemble: unknown size"); |
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268 } |
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269 } |
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270 } |
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271 } |
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272 |
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273 return retval; |
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274 } |