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remove requirement of ZLIB; remove obsolete nan2conv.m
author schloegl
date Fri, 10 Feb 2012 09:50:15 +0000
parents 3fad4ff49e91
children 7740a34f1dac
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1 ####################################################
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2 # Copyright 2010, 2011 Alois Schloegl
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3 # This is part of the NaN-toolbox - a statistics and machine learning toolbox for data with and without missing values.
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4 # http://pub.ist.ac.at/~schloegl/matlab/NaN/
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5 ####################################################
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6
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7 ### modify directories according to your needs
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8
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9 # Octave - global install (e.g. from debian package)
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10 # OCTAVE_VERSION =
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11
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12 # Matlab configuration
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13 MATLABDIR = /usr/local/MATLAB/R2010b
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14 # comment the following line if you use MATLAB on 32-bit operating system
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15 MEX_OPTION += -largeArrayDims
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16
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17 # Mingw crosscompiler: available at http://www.nongnu.org/mingw-cross-env/
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18 CROSS = $(HOME)/src/mingw-cross-env/usr/bin/i686-pc-mingw32-
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19 CROSS64 = $(HOME)/src/mce-w64/usr/bin/x86_64-w64-mingw32-
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20 # include directory for Win32-Matlab include
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21 W32MAT_INC = $(HOME)/bin/win32/Matlab/R2010b/extern/include/
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22 W64MAT_INC = $(HOME)/bin/win64/Matlab/R2010b/extern/include/
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23 # path to GNUMEX libraries, available from here http://sourceforge.net/projects/gnumex/
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24 GNUMEX = $(HOME)/bin/win32/gnumex
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25 GNUMEX64 = $(HOME)/bin/win64/gnumex
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26 # building gnumex64 was difficult, these hints were quite useful:
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27 # http://sourceforge.net/mailarchive/forum.php?thread_name=AANLkTinZvxgC9ezp2P3UCX_a7TAUYuVsp2U40MQUV6qr%40mail.gmail.com&forum_name=gnumex-users
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28 # Instead of building "mex shortpath.c" and "mex uigetpath.c", I used empty m-functions within argout=argin;
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29 ####################################################
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30
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31 CC = gcc
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32 CXX = g++
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33 CFLAGS = -fopenmp -Wall -Wextra -Wconversion -O2 -fPIC
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34 OCTMEX = mkoctfile$(OCTAVE_VERSION) --mex
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35 RM = rm
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36
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37 MEX_OPTION += -lgomp CC\#$(CXX) CXX\#$(CXX) CFLAGS\#"$(CFLAGS)" CXXFLAGS\#"$(CFLAGS)"
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38 MATMEX = $(MATLABDIR)/bin/mex $(MEX_OPTION)
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39
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40 PROGS = histo_mex.mex covm_mex.mex kth_element.mex sumskipnan_mex.mex str2array.mex train.mex svmtrain_mex.mex svmpredict_mex.mex xptopen.mex
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41
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42 mex4o octave: $(PROGS)
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43
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44 ifneq ( , $(ls -1 $(MATLABDIR) ) )
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45 MEX_EXT = $(shell $(MATLABDIR)/bin/mexext)
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46 mex4m matlab: $(patsubst %.mex, %.$(MEX_EXT), $(PROGS))
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47 endif
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48 mexw32 win32: $(patsubst %.mex, %.mexw32, $(PROGS))
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49 mexw64 win64: $(patsubst %.mex, %.mexw64, $(PROGS))
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50 all: octave win32 win64 mex4m
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51
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52 clean:
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53 -$(RM) *.o *.obj *.o64 core octave-core *.oct *~ *.mex*
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54
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55 $(PROGS): Makefile
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56
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57 #########################################################
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58 # Octave, MATLAB on Linux
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59 #########################################################
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60 %.oct: %.cc
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61 mkoctfile$(OCTAVE_VERSION) $<
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62
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63 %.mex: %.cpp
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64 $(OCTMEX) $< -lgomp ## Octave
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65 %.$(MEX_EXT): %.cpp
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66 $(MATMEX) $< -lgomp ## Matlab
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67
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68 svmtrain_mex.mex svmpredict_mex.mex: svmtrain_mex.cpp svm.h svm.cpp svm_model_matlab.c svmpredict_mex.cpp
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69 $(CXX) $(CFLAGS) -c svm.cpp
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70 #$(CC) $(CFLAGS) $(INCOCTAVE) -c svm_model_matlab.c
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71 env CC=$(CXX) $(OCTMEX) svmtrain_mex.cpp svm.o svm_model_matlab.c
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72 env CC=$(CXX) $(OCTMEX) svmpredict_mex.cpp svm.o svm_model_matlab.c
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73
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74 svmtrain_mex.$(MEX_EXT) svmpredict_mex.$(MEX_EXT): svmtrain_mex.cpp svm.h svm.cpp svm_model_matlab.c svmpredict_mex.cpp
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75 $(CXX) $(CFLAGS) -I $(MATLABDIR)/extern/include -c svm.cpp
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76 $(CC) $(CFLAGS) -I $(MATLABDIR)/extern/include -c svm_model_matlab.c
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77 $(MATMEX) svmtrain_mex.cpp svm.o svm_model_matlab.o
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78 $(MATMEX) svmpredict_mex.cpp svm.o svm_model_matlab.o
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79
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80 train.$(MEX_EXT) predict.$(MEX_EXT): train.c linear.h tron.o linear.o linear_model_matlab.c
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81 $(CC) $(CFLAGS) -I $(MATLABDIR)/extern/include -c linear_model_matlab.c
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82 $(MATMEX) -lblas train.c tron.o linear.o linear_model_matlab.o
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83 #$(MATMEX) -lblas predict.c tron.o linear.o linear_model_matlab.o
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84
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85 train.mex predict.mex: train.c linear.h tron.o linear.o linear_model_matlab.c
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86 env CC=$(CXX) $(OCTMEX) -lblas train.c tron.o linear.o linear_model_matlab.c
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87 #env CC=$(CXX) $(OCTMEX) -lblas predict.c tron.o linear.o linear_model_matlab.o
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88
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89 linear.o: linear.cpp linear.h
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90 $(CXX) $(CFLAGS) -c linear.cpp
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91
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92 tron.o: tron.cpp tron.h
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93 $(CXX) $(CFLAGS) -c tron.cpp
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94
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95
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96 #########################################################
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97 # MATLAB/WIN32
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98 #########################################################
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99 %.obj: %.cpp
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100 $(CROSS)$(CXX) -fopenmp -c -DMATLAB_MEX_FILE -x c++ -o $@ -I$(W32MAT_INC) -O2 -DMX_COMPAT_32 $<
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101 %.obj: %.c
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102 $(CROSS)$(CXX) -fopenmp -c -DMATLAB_MEX_FILE -x c++ -o $@ -I$(W32MAT_INC) -O2 -DMX_COMPAT_32 $<
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103
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104 train.mexw32 predict.mexw32: train.obj linear.obj linear_model_matlab.obj tron.obj
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105 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o $@ -L$(GNUMEX) -s $< linear_model_matlab.obj linear.obj tron.obj -llibmx -llibmex -llibmat -lcholmod -lblas
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106
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107 svmpredict_mex.mexw32 : svmpredict_mex.obj svm.obj svm_model_matlab.obj
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108 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o $@ -L$(GNUMEX) -s $< svm_model_matlab.obj svm.obj -llibmx -llibmex -llibmat -lcholmod
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109 svmtrain_mex.mexw32 : svmtrain_mex.obj svm.obj svm_model_matlab.obj
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110 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o $@ -L$(GNUMEX) -s $< svm_model_matlab.obj svm.obj -llibmx -llibmex -llibmat -lcholmod
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111
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112 %.mexw32: %.obj
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113 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o $@ -L$(GNUMEX) -s $< -llibmx -llibmex -llibmat -lcholmod -lgomp -lpthread
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114
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115
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116
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117 #########################################################
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118 # MATLAB/WIN64
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119 #########################################################
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120
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121 ## ToDO: fix OpenMP support: currently -fopenmp causes Matlab to crash
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122 %.o64: %.cpp
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123 $(CROSS64)$(CXX) -c -DMATLAB_MEX_FILE -x c++ -o $@ -I$(W64MAT_INC) -O2 $<
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124 %.o64: %.c
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125 $(CROSS64)$(CXX) -c -DMATLAB_MEX_FILE -x c++ -o $@ -I$(W64MAT_INC) -O2 $<
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126
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127 train.mexw64 predict.mexw64: train.o64 linear.o64 linear_model_matlab.o64 tron.o64
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128 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o $@ -L$(GNUMEX64) -s $< linear_model_matlab.o64 linear.o64 tron.o64 -llibmx -llibmex -llibmat -lcholmod -lblas
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129
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130 svmpredict_mex.mexw64 : svmpredict_mex.o64 svm.o64 svm_model_matlab.o64
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131 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o $@ -L$(GNUMEX64) -s $< svm_model_matlab.o64 svm.o64 -llibmx -llibmex -llibmat -lcholmod
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132 svmtrain_mex.mexw64 : svmtrain_mex.o64 svm.o64 svm_model_matlab.o64
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133 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o $@ -L$(GNUMEX64) -s $< svm_model_matlab.o64 svm.o64 -llibmx -llibmex -llibmat -lcholmod
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134
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135 %.mexw64: %.o64
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136 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o $@ -L$(GNUMEX64) -s $< -llibmx -llibmex -llibmat -lcholmod -lgomp -lpthread
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8d8da31799c0 add support for building mexw64
schloegl
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137