annotate liboctave/util/nz-iterators.h @ 19006:2e0613dadfee draft

All calls to "find" use the same generic implementation (bug #42408, 42421) * find.cc: Rewrite. Move generic "find" logic to find.h (Ffind) : Changed calls to find_nonzero_elem_idx to find_templated Added unit test for bug #42421 * Array.cc (and .h) (Array::find): Deleted function. Replaced with find::find(Array) from find.h * Array.h: Added typedef for array_iterator (in nz-iterators.h) as Array::iter_type * DiagArray2.h: Added typedef for diag_iterator (in nz-iterators.h) as DiagArray2::iter_type * PermMatrix.h: Added typedef for perm_iterator (in nz-iterators.h) as PermMatrix::iter_type Also added typedef for bool as PermMatrix::element_type (not octave_idx_type) Added an nnz() function (which is an alias for perm_length) and a perm_elem(i) function for retrieving the ith element of the permutation * Sparse.h: Added typedef for sparse_iterator (in nz-iterators.h) as Sparse::iter_type Added a short comment documenting the the argument to the numel function * idx-vector.cc (idx_vector::idx_mask_rep::as_array): Changed Array.find to find::find(Array) (in find.h) * (new file) find.h * (new file) interp-idx.h: Simple methods for converting between interpreter index type and internal octave_idx_type/row-col pair * (new file) min-with-nnz.h: Fast methods for taking an arbitrary matrix M and an octave_idx_type n and finding min(M.nnz(), n) * (new file) nz-iterators.h: Iterators for traversing (in column-major order) the nonzero elements of any array or matrix backwards or forwards * (new file) direction.h: Generic methods for simplifying code has to deal with a "backwards or forwards" template argument * build-sparse-tests.sh: Removed 5-return-value calls to "find" in unit-tests; Admittedly this commit breaks this "feature" which was undocumented and only partially supported to begin with (ie never worked for full matrices, permutation matrices, or diagonal matrices)
author David Spies <dnspies@gmail.com>
date Tue, 17 Jun 2014 16:41:11 -0600
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children 8d47ce2053f2
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19006
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1 /*
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2
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3 Copyright (C) 2014 David Spies
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4
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5 This file is part of Octave.
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6
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7 Octave is free software; you can redistribute it and/or modify it
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8 under the terms of the GNU General Public License as published by the
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9 Free Software Foundation; either version 3 of the License, or (at your
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10 option) any later version.
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11
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12 Octave is distributed in the hope that it will be useful, but WITHOUT
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13 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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14 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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15 for more details.
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16
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17 You should have received a copy of the GNU General Public License
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18 along with Octave; see the file COPYING. If not, see
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19 <http://www.gnu.org/licenses/>.
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20
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21 */
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22 #if !defined (octave_nz_iterators_h)
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23 #define octave_nz_iterators_h 1
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24
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25 #include "interp-idx.h"
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26 #include "oct-inttypes.h"
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27 #include "Array.h"
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28 #include "DiagArray2.h"
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29 #include "PermMatrix.h"
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30 #include "Sparse.h"
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31 #include "direction.h"
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32
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33 // This file contains generic column-major iterators over
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34 // the nonzero elements of any array or matrix. If you have a matrix mat
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35 // of type M, you can construct the proper iterator type using
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36 // M::iter_type iter(mat) and iter will iterate efficiently (forwards
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37 // or backwards) over the nonzero elements of mat.
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38 //
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39 // The parameter T is the element-type except for PermMatrix where
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40 // the element type is always bool
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41 //
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42 // Use a dir_handler to indicate which direction you intend to iterate.
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43 // (see step-dir.h). begin() resets the iterator to the beginning or
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44 // end of the matrix (for dir_handler<FORWARD> and <BACKWARD> respectively).
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45 // finished(dirc) indicates whether the iterators has finished traversing
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46 // the nonzero elements. step(dirc) steps from one element to the next.
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47 //
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48 // You can, for instance, use a for-loop as follows:
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49 //
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50 // typedef M::iter_type iter_t;
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51 // typedef M::element_type T;
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52 //
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53 // iter_t iter(mat);
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54 // dir_handler<1> dirc;
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55 //
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56 // for(iter.begin (dirc); !iter.finished (dirc); iter.step (dirc))
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57 // {
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58 // octave_idx_type row = iter.row();
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59 // octave_idx_type col = iter.col();
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60 // double doub_index = iter.interp_index ();
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61 // T elem = iter.data();
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62 // // ... Do something with these
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63 // }
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64 //
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65 // Note that array_iter for indexing over full matrices also includes
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66 // a iter.flat_index () method which returns an octave_idx_type.
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67 //
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68 // The other iterators to not have a flat_index() method because they
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69 // risk overflowing octave_idx_type. It is recommended you take care
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70 // to implement your function in a way that accounts for this problem.
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71 //
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72 // FIXME: I'd like to add in these
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73 // default no-parameter versions of
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74 // begin() and step() to each of the
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75 // classes. But the C++ compiler complains
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76 // because apparently I'm not allowed to overload
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77 // templated methods with non-templated ones. Any
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78 // ideas for work-arounds?
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79 //
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80 //#define INCLUDE_DEFAULT_STEPS \
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81 // void begin (void) \
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82 // { \
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83 // dir_handler<FORWARD> dirc; \
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84 // begin (dirc); \
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85 // } \
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86 // void step (void) \
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87 // { \
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88 // dir_handler<FORWARD> dirc; \
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89 // step (dirc); \
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90 // } \
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91 // bool finished (void) const \
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92 // { \
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93 // dir_handler<FORWARD> dirc; \
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94 // return finished (dirc); \
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95 // }
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96
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97 // A generic method for checking if some element of a matrix with
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98 // element type T is zero.
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99 template<typename T>
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100 bool
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101 is_zero (T t)
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102 {
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103 return t == static_cast<T> (0);
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104 }
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105
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106 // An iterator over full arrays. When the number of dimensions exceeds
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107 // 2, calls to iter.col() may exceed mat.cols() up to mat.dims().numel(1)
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108 //
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109 // This mimics the behavior of the "find" method (both in Octave and Matlab)
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110 // on many-dimensional matrices.
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111
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112 template<typename T>
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113 class array_iterator
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114 {
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115 private:
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116 const Array<T>& mat;
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117
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118 //Actual total number of columns = mat.dims().numel(1)
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119 //can be different from length of row dimension
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120 const octave_idx_type totcols;
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121 const octave_idx_type numels;
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122
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123 octave_idx_type coli;
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124 octave_idx_type rowj;
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125 octave_idx_type my_idx;
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126
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127 template<direction dir>
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128 void
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129 step_once (dir_handler<dir> dirc)
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130 {
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131 my_idx += dir;
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132 rowj += dir;
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133 if (dirc.is_ended (rowj, mat.rows ()))
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134 {
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135 rowj = dirc.begin (mat.rows ());
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136 coli += dir;
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137 }
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138 }
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139
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140 template<direction dir>
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141 void
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142 move_to_nz (dir_handler<dir> dirc)
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143 {
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144 while (!finished (dirc) && is_zero (data ()))
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145 {
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146 step_once (dirc);
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147 }
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148 }
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149
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150
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151 public:
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152 array_iterator (const Array<T>& arg_mat)
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153 : mat (arg_mat), totcols (arg_mat.dims ().numel (1)), numels (
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154 totcols * arg_mat.rows ())
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155 {
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156 dir_handler<FORWARD> dirc;
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157 begin (dirc);
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158 }
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159
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160 template<direction dir>
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161 void
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162 begin (dir_handler<dir> dirc)
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163 {
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164 coli = dirc.begin (totcols);
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165 rowj = dirc.begin (mat.rows ());
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166 my_idx = dirc.begin (mat.numel ());
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167 move_to_nz (dirc);
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168 }
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169
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170 octave_idx_type
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171 col (void) const
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172 {
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173 return coli;
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174 }
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175 octave_idx_type
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176 row (void) const
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177 {
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178 return rowj;
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179 }
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180 double
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181 interp_idx (void) const
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182 {
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183 return to_interp_idx (my_idx);
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184 }
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185 octave_idx_type
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186 flat_idx (void) const
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187 {
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188 return my_idx;
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189 }
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190 T
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191 data (void) const
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192 {
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193 return mat.elem (my_idx);
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194 }
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195
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196 template<direction dir>
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197 void
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198 step (dir_handler<dir> dirc)
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199 {
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200 step_once (dirc);
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201 move_to_nz (dirc);
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202 }
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203 template<direction dir>
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204 bool
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205 finished (dir_handler<dir> dirc) const
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206 {
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207 return dirc.is_ended (my_idx, numels);
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208 }
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209 };
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210
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211 template<typename T>
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212 class sparse_iterator
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213 {
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214 private:
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215 const Sparse<T>& mat;
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216 octave_idx_type coli;
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217 octave_idx_type my_idx;
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218
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219 template<direction dir>
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220 void
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221 adjust_col (dir_handler<dir> dirc)
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222 {
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223 while (!finished (dirc)
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224 && dirc.is_ended (my_idx, mat.cidx (coli), mat.cidx (coli + 1)))
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225 coli += dir;
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226 }
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227
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228 public:
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229 sparse_iterator (const Sparse<T>& arg_mat) :
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230 mat (arg_mat)
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231 {
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232 dir_handler<FORWARD> dirc;
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233 begin (dirc);
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234 }
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235
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236 template<direction dir>
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237 void
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238 begin (dir_handler<dir> dirc)
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239 {
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240 coli = dirc.begin (mat.cols ());
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241 my_idx = dirc.begin (mat.nnz ());
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242 adjust_col (dirc);
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243 }
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244
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245 double
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246 interp_idx (void) const
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247 {
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248 return to_interp_idx (row (), col (), mat.rows ());
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249 }
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250 octave_idx_type
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251 col (void) const
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252 {
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253 return coli;
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254 }
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255 octave_idx_type
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256 row (void) const
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257 {
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258 return mat.ridx (my_idx);
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259 }
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260 T
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261 data (void) const
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262 {
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263 return mat.data (my_idx);
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264 }
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265 template<direction dir>
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266 void
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267 step (dir_handler<dir> dirc)
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268 {
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269 my_idx += dir;
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270 adjust_col (dirc);
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271 }
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272 template<direction dir>
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273 bool
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274 finished (dir_handler<dir> dirc) const
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275 {
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276 return dirc.is_ended (coli, mat.cols ());
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277 }
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278 };
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279
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280 template<typename T>
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281 class diag_iterator
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282 {
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283 private:
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284 const DiagArray2<T>& mat;
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285 octave_idx_type my_idx;
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286
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287 template <direction dir>
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288 void
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289 move_to_nz (dir_handler<dir> dirc)
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290 {
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291 while (!finished (dirc) && is_zero (data ()))
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292 {
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293 my_idx += dir;
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294 }
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295 }
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296
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297 public:
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298 diag_iterator (const DiagArray2<T>& arg_mat) :
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299 mat (arg_mat)
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300 {
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301 dir_handler<FORWARD> dirc;
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302 begin (dirc);
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303 }
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304
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305 template<direction dir>
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306 void
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307 begin (dir_handler<dir> dirc)
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308 {
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309 my_idx = dirc.begin (mat.diag_length ());
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310 move_to_nz (dirc);
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311 }
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312
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313 double
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314 interp_idx (void) const
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315 {
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316 return to_interp_idx (row (), col (), mat.rows ());
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317 }
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318 octave_idx_type
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319 col (void) const
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320 {
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321 return my_idx;
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322 }
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323 octave_idx_type
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324 row (void) const
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325 {
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326 return my_idx;
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327 }
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328 T
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329 data (void) const
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330 {
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331 return mat.dgelem (my_idx);
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332 }
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333 template<direction dir>
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334 void
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335 step (dir_handler<dir> dirc)
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336 {
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337 my_idx += dir;
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338 move_to_nz (dirc);
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339 }
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340 template<direction dir>
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341 bool
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342 finished (dir_handler<dir> dirc) const
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343 {
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344 return dirc.is_ended (my_idx, mat.diag_length ());
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345 }
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346 };
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347
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348 class perm_iterator
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349 {
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350 private:
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351 const PermMatrix& mat;
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352 octave_idx_type my_idx;
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353
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354 public:
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355 perm_iterator (const PermMatrix& arg_mat) :
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356 mat (arg_mat)
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357 {
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358 dir_handler<FORWARD> dirc;
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diff changeset
359 begin (dirc);
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360 }
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361
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diff changeset
362 template<direction dir>
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David Spies <dnspies@gmail.com>
parents:
diff changeset
363 void
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David Spies <dnspies@gmail.com>
parents:
diff changeset
364 begin (dir_handler<dir> dirc)
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diff changeset
365 {
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diff changeset
366 my_idx = dirc.begin (mat.cols ());
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diff changeset
367 }
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368
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David Spies <dnspies@gmail.com>
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diff changeset
369 octave_idx_type
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370 interp_idx (void) const
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diff changeset
371 {
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diff changeset
372 return to_interp_idx (row (), col (), mat.rows ());
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373 }
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diff changeset
374 octave_idx_type
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David Spies <dnspies@gmail.com>
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375 col (void) const
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David Spies <dnspies@gmail.com>
parents:
diff changeset
376 {
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diff changeset
377 return my_idx;
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parents:
diff changeset
378 }
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parents:
diff changeset
379 octave_idx_type
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David Spies <dnspies@gmail.com>
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diff changeset
380 row (void) const
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parents:
diff changeset
381 {
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diff changeset
382 return mat.perm_elem (my_idx);
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diff changeset
383 }
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parents:
diff changeset
384 bool
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diff changeset
385 data (void) const
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David Spies <dnspies@gmail.com>
parents:
diff changeset
386 {
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diff changeset
387 return true;
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diff changeset
388 }
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David Spies <dnspies@gmail.com>
parents:
diff changeset
389 template<direction dir>
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David Spies <dnspies@gmail.com>
parents:
diff changeset
390 void
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David Spies <dnspies@gmail.com>
parents:
diff changeset
391 step (dir_handler<dir>)
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David Spies <dnspies@gmail.com>
parents:
diff changeset
392 {
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diff changeset
393 my_idx += dir;
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David Spies <dnspies@gmail.com>
parents:
diff changeset
394 }
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David Spies <dnspies@gmail.com>
parents:
diff changeset
395 template<direction dir>
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David Spies <dnspies@gmail.com>
parents:
diff changeset
396 bool
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David Spies <dnspies@gmail.com>
parents:
diff changeset
397 finished (dir_handler<dir> dirc) const
2e0613dadfee All calls to "find" use the same generic implementation (bug #42408, 42421)
David Spies <dnspies@gmail.com>
parents:
diff changeset
398 {
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David Spies <dnspies@gmail.com>
parents:
diff changeset
399 return dirc.is_ended (my_idx, mat.rows ());
2e0613dadfee All calls to "find" use the same generic implementation (bug #42408, 42421)
David Spies <dnspies@gmail.com>
parents:
diff changeset
400 }
2e0613dadfee All calls to "find" use the same generic implementation (bug #42408, 42421)
David Spies <dnspies@gmail.com>
parents:
diff changeset
401 };
2e0613dadfee All calls to "find" use the same generic implementation (bug #42408, 42421)
David Spies <dnspies@gmail.com>
parents:
diff changeset
402
2e0613dadfee All calls to "find" use the same generic implementation (bug #42408, 42421)
David Spies <dnspies@gmail.com>
parents:
diff changeset
403 #endif