annotate doc/interpreter/tips.txi @ 11981:f69e27ff396a release-3-2-x

fix jwe email address
author John W. Eaton <jwe@octave.org>
date Thu, 11 Jun 2009 07:13:19 +0200
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1 @c Copyright (C) 1996, 1997, 1999, 2002, 2004, 2005, 2007, 2008,
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2 @c 2009 John W. Eaton
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3 @c
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4 @c This file is part of Octave.
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5 @c
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6 @c Octave is free software; you can redistribute it and/or modify it
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7 @c under the terms of the GNU General Public License as published by the
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8 @c Free Software Foundation; either version 3 of the License, or (at
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9 @c your option) any later version.
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10 @c
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11 @c Octave is distributed in the hope that it will be useful, but WITHOUT
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12 @c ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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13 @c FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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14 @c for more details.
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15 @c
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16 @c You should have received a copy of the GNU General Public License
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17 @c along with Octave; see the file COPYING. If not, see
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18 @c <http://www.gnu.org/licenses/>.
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19
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20 @node Tips and Standards
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21 @appendix Tips and Standards
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22 @cindex tips
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23 @cindex standards of coding style
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24 @cindex coding standards
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25
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26 This chapter describes no additional features of Octave. Instead it
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27 gives advice on making effective use of the features described in the
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28 previous chapters.
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29
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30 @menu
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31 * Style Tips:: Writing clean and robust programs.
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32 * Coding Tips:: Making code run faster.
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33 * Comment Tips:: Conventions for writing comments.
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34 * Function Headers:: Standard headers for functions.
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35 * Documentation Tips:: Writing readable documentation strings.
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36 @end menu
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37
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38 @node Style Tips
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39 @section Writing Clean Octave Programs
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40
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41 Here are some tips for avoiding common errors in writing Octave code
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42 intended for widespread use:
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43
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44 @itemize @bullet
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45 @item
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46 Since all global variables share the same name space, and all functions
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47 share another name space, you should choose a short word to distinguish
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48 your program from other Octave programs. Then take care to begin the
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49 names of all global variables, constants, and functions with the chosen
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50 prefix. This helps avoid name conflicts.
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51
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52 If you write a function that you think ought to be added to Octave under
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53 a certain name, such as @code{fiddle_matrix}, don't call it by that name
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54 in your program. Call it @code{mylib_fiddle_matrix} in your program,
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55 and send mail to @email{maintainers@@octave.org} suggesting that it
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56 be added to Octave. If and when it is, the name can be changed easily
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57 enough.
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58
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59 If one prefix is insufficient, your package may use two or three
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60 alternative common prefixes, so long as they make sense.
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61
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62 Separate the prefix from the rest of the symbol name with an underscore
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63 @samp{_}. This will be consistent with Octave itself and with most
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64 Octave programs.
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65
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66 @item
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67 When you encounter an error condition, call the function @code{error}
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68 (or @code{usage}). The @code{error} and @code{usage} functions do not
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69 return.
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70 @xref{Errors}.
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71
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72 @item
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73 Please put a copyright notice on the file if you give copies to anyone.
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74 Use the same lines that appear at the top of the function files
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75 distributed with Octave. If you have not signed papers to assign the
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76 copyright to anyone else, then place your name in the copyright notice.
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77 @end itemize
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78
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79 @node Coding Tips
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80 @section Tips for Making Code Run Faster.
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81 @cindex execution speed
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82 @cindex speedups
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83
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84 Here are some ways of improving the execution speed of Octave programs.
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85
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86 @itemize @bullet
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87 @item
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88 Avoid looping wherever possible.
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89
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90 @item
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91 Use iteration rather than recursion whenever possible.
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92 Function calls are slow in Octave.
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93
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94 @item
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95 Avoid resizing matrices unnecessarily. When building a single result
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96 matrix from a series of calculations, set the size of the result matrix
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97 first, then insert values into it. Write
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98
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99 @example
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100 @group
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101 result = zeros (big_n, big_m)
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102 for i = over:and_over
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103 r1 = @dots{}
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104 r2 = @dots{}
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105 result (r1, r2) = new_value ();
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106 endfor
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107 @end group
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108 @end example
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109
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110 @noindent
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111 instead of
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112
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113 @example
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114 @group
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115 result = [];
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116 for i = ever:and_ever
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117 result = [ result, new_value() ];
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118 endfor
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119 @end group
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120 @end example
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121
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122 @item
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123 Avoid calling @code{eval} or @code{feval} whenever possible, because
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124 they require Octave to parse input or look up the name of a function in
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125 the symbol table.
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126
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127 If you are using @code{eval} as an exception handling mechanism and not
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128 because you need to execute some arbitrary text, use the @code{try}
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129 statement instead. @xref{The @code{try} Statement}.
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130
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131 @item
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132 If you are calling lots of functions but none of them will need to
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133 change during your run, set the variable
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134 @code{ignore_function_time_stamp} to @code{"all"} so that Octave doesn't
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135 waste a lot of time checking to see if you have updated your function
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136 files.
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137 @end itemize
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138
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139 @node Comment Tips
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140 @section Tips on Writing Comments
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141
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142 Here are the conventions to follow when writing comments.
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143
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144 @table @samp
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145 @item #
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146 Comments that start with a single sharp-sign, @samp{#}, should all be
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147 aligned to the same column on the right of the source code. Such
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148 comments usually explain how the code on the same line does its job. In
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149 the Emacs mode for Octave, the @kbd{M-;} (@code{indent-for-comment})
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150 command automatically inserts such a @samp{#} in the right place, or
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151 aligns such a comment if it is already present.
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152
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153 @item ##
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154 Comments that start with a double sharp-sign, @samp{##}, should be aligned to
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155 the same level of indentation as the code. Such comments usually
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156 describe the purpose of the following lines or the state of the program
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157 at that point.
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158 @end table
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159
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160 @noindent
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161 The indentation commands of the Octave mode in Emacs, such as @kbd{M-;}
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162 (@code{indent-for-comment}) and @kbd{TAB} (@code{octave-indent-line})
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163 automatically indent comments according to these conventions,
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164 depending on the number of semicolons. @xref{Comments,,
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165 Manipulating Comments, emacs, The GNU Emacs Manual}.
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166
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167 @node Function Headers
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168 @section Conventional Headers for Octave Functions
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169 @cindex header comments
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170
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171 Octave has conventions for using special comments in function files
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172 to give information such as who wrote them. This section explains these
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173 conventions.
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174
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175 The top of the file should contain a copyright notice, followed by a
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176 block of comments that can be used as the help text for the function.
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177 Here is an example:
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178
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179 @example
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180 ## Copyright (C) 1996, 1997, 2007 John W. Eaton
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181 ##
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182 ## This file is part of Octave.
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183 ##
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184 ## Octave is free software; you can redistribute it and/or
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185 ## modify it under the terms of the GNU General Public
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186 ## License as published by the Free Software Foundation;
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187 ## either version 3 of the License, or (at your option) any
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188 ## later version.
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189 ##
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190 ## Octave is distributed in the hope that it will be useful,
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191 ## but WITHOUT ANY WARRANTY; without even the implied
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192 ## warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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193 ## PURPOSE. See the GNU General Public License for more
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194 ## details.
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195 ##
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196 ## You should have received a copy of the GNU General Public
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197 ## License along with Octave; see the file COPYING. If not,
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198 ## see <http://www.gnu.org/licenses/>.
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199
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200 ## usage: [IN, OUT, PID] = popen2 (COMMAND, ARGS)
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201 ##
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202 ## Start a subprocess with two-way communication. COMMAND
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203 ## specifies the name of the command to start. ARGS is an
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204 ## array of strings containing options for COMMAND. IN and
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205 ## OUT are the file ids of the input and streams for the
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206 ## subprocess, and PID is the process id of the subprocess,
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207 ## or -1 if COMMAND could not be executed.
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208 ##
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209 ## Example:
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210 ##
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211 ## [in, out, pid] = popen2 ("sort", "-nr");
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212 ## fputs (in, "these\nare\nsome\nstrings\n");
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213 ## fclose (in);
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214 ## while (ischar (s = fgets (out)))
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215 ## fputs (stdout, s);
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216 ## endwhile
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217 ## fclose (out);
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218 @end example
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219
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220 Octave uses the first block of comments in a function file that do not
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221 appear to be a copyright notice as the help text for the file. For
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222 Octave to recognize the first comment block as a copyright notice, it
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223 must start with the word `Copyright' after stripping the leading
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224 comment characters.
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225
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226 After the copyright notice and help text come several @dfn{header
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227 comment} lines, each beginning with @samp{## @var{header-name}:}. For
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228 example,
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229
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230 @example
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231 @group
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232 ## Author: jwe
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233 ## Keywords: subprocesses input-output
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234 ## Maintainer: jwe
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235 @end group
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236 @end example
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237
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238 Here is a table of the conventional possibilities for @var{header-name}:
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239
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240 @table @samp
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241 @item Author
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242 This line states the name and net address of at least the principal
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243 author of the library.
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244
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245 @example
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246 ## Author: John W. Eaton <jwe@@octave.org>
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247 @end example
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248
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249 @item Maintainer
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250 This line should contain a single name/address as in the Author line, or
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251 an address only, or the string @samp{jwe}. If there is no maintainer
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252 line, the person(s) in the Author field are presumed to be the
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253 maintainers. The example above is mildly bogus because the maintainer
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254 line is redundant.
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255
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256 The idea behind the @samp{Author} and @samp{Maintainer} lines is to make
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257 possible a function to ``send mail to the maintainer'' without
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258 having to mine the name out by hand.
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259
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260 Be sure to surround the network address with @samp{<@dots{}>} if
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261 you include the person's full name as well as the network address.
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262
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263 @item Created
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264 This optional line gives the original creation date of the
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265 file. For historical interest only.
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266
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267 @item Version
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268 If you wish to record version numbers for the individual Octave program,
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269 put them in this line.
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270
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271 @item Adapted-By
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272 In this header line, place the name of the person who adapted the
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273 library for installation (to make it fit the style conventions, for
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274 example).
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275
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276 @item Keywords
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277 This line lists keywords. Eventually, it will be used by an apropos
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278 command to allow people will find your package when they're looking for
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279 things by topic area. To separate the keywords, you can use spaces,
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280 commas, or both.
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281 @end table
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282
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283 Just about every Octave function ought to have the @samp{Author} and
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284 @samp{Keywords} header comment lines. Use the others if they are
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285 appropriate. You can also put in header lines with other header
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286 names---they have no standard meanings, so they can't do any harm.
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287
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288 @node Documentation Tips
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289 @section Tips for Documentation Strings
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290
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291 As noted above, documentation is typically in a commented header block
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292 on an Octave function following the copyright statement. The help string
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293 shown above is an unformatted string and will be displayed as is by
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294 Octave. Here are some tips for the writing of documentation strings.
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295
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296 @itemize @bullet
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297 @item
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298 Every command, function, or variable intended for users to know about
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299 should have a documentation string.
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300
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301 @item
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302 An internal variable or subroutine of an Octave program might as well have
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303 a documentation string.
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304
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305 @item
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306 The first line of the documentation string should consist of one or two
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307 complete sentences that stand on their own as a summary.
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308
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309 The documentation string can have additional lines that expand on the
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310 details of how to use the function or variable. The additional lines
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311 should also be made up of complete sentences.
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312
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313 @item
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314 For consistency, phrase the verb in the first sentence of a
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315 documentation string as an infinitive with ``to'' omitted. For
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316 instance, use ``Return the frob of A and B.'' in preference to ``Returns
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317 the frob of A and B@.'' Usually it looks good to do likewise for the
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318 rest of the first paragraph. Subsequent paragraphs usually look better
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319 if they have proper subjects.
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320
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321 @item
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322 Write documentation strings in the active voice, not the passive, and in
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323 the present tense, not the future. For instance, use ``Return a list
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324 containing A and B.'' instead of ``A list containing A and B will be
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325 returned.''
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326
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327 @item
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328 Avoid using the word ``cause'' (or its equivalents) unnecessarily.
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329 Instead of, ``Cause Octave to display text in boldface,'' write just
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330 ``Display text in boldface.''
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331
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332 @item
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333 Do not start or end a documentation string with whitespace.
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334
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335 @item
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336 Format the documentation string so that it fits in an Emacs window on an
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337 80-column screen. It is a good idea for most lines to be no wider than
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338 60 characters.
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339
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340 However, rather than simply filling the entire documentation string, you
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341 can make it much more readable by choosing line breaks with care.
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342 Use blank lines between topics if the documentation string is long.
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343
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344 @item
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345 @strong{Do not} indent subsequent lines of a documentation string so
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346 that the text is lined up in the source code with the text of the first
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347 line. This looks nice in the source code, but looks bizarre when users
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348 view the documentation. Remember that the indentation before the
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349 starting double-quote is not part of the string!
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350
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351 @item
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352 The documentation string for a variable that is a yes-or-no flag should
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353 start with words such as ``Nonzero means@dots{}'', to make it clear that
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354 all nonzero values are equivalent and indicate explicitly what zero and
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355 nonzero mean.
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356
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357 @item
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358 When a function's documentation string mentions the value of an argument
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359 of the function, use the argument name in capital letters as if it were
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360 a name for that value. Thus, the documentation string of the operator
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361 @code{/} refers to its second argument as @samp{DIVISOR}, because the
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362 actual argument name is @code{divisor}.
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363
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364 Also use all caps for meta-syntactic variables, such as when you show
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365 the decomposition of a list or vector into subunits, some of which may
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366 vary.
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367 @end itemize
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368
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369 Octave also allows extensive formatting of the help string of functions
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370 using Texinfo. The effect on the online documentation is relatively
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371 small, but makes the help string of functions conform to the help of
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372 Octave's own functions. However, the effect on the appearance of printed
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373 or online documentation will be greatly improved.
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374
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375 The fundamental building block of Texinfo documentation strings is the
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376 Texinfo-macro @code{@@deftypefn}, which takes three arguments: The class
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377 the function is in, its output arguments, and the function's
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378 signature. Typical classes for functions include @code{Function File}
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379 for standard Octave functions, and @code{Loadable Function} for
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380 dynamically linked functions. A skeletal Texinfo documentation string
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381 therefore looks like this
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382
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383 @example
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384 @group
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385 -*- texinfo -*-
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386 @@deftypefn@{Function File@} @{@@var@{ret@} =@} fn (@dots{})
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387 @@cindex index term
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388 Help text in Texinfo format. Code samples should be marked
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389 like @@code@{sample of code@} and variables should be marked
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390 as @@var@{variable@}.
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391 @@seealso@{fn2@}
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392 @@end deftypefn
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393 @end group
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394 @end example
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395
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396 This help string must be commented in user functions, or in the help
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397 string of the @w{@code{DEFUN_DLD}} macro for dynamically loadable
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398 functions. The important aspects of the documentation string are
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399
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400 @table @asis
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401 @item -*- texinfo -*-
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402 This string signals Octave that the following text is in Texinfo format,
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403 and should be the first part of any help string in Texinfo format.
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404 @item @@deftypefn@{class@} @dots{} @@end deftypefn
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405 The entire help string should be enclosed within the block defined by
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406 deftypefn.
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407 @item @@cindex index term
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408 This generates an index entry, and can be useful when the function is
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409 included as part of a larger piece of documentation. It is ignored
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410 within Octave's help viewer. Only one index term may appear per line
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411 but multiple @@cindex lines are valid if the function should be
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412 filed under different terms.
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413 @item @@var@{variable@}
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414 All variables should be marked with this macro. The markup of variables
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415 is then changed appropriately for display.
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416 @item @@code@{sample of code@}
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417 All samples of code should be marked with this macro for the same
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418 reasons as the @@var macro.
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419 @item @@seealso@{function2@}
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420 This is a comma separated list of function names that allows cross
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421 referencing from one function documentation string to another.
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422 @end table
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423
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424 Texinfo format has been designed to generate output for online viewing
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425 with text terminals as well as generating high-quality printed output.
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426 To these ends, Texinfo has commands which control the diversion of parts
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427 of the document into a particular output processor. Three formats are
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428 of importance: info, html and @TeX{}. These are selected with
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429
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430 @example
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431 @group
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432 @@ifinfo
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433 Text area for info only
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434 @@end ifinfo
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435 @end group
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436 @end example
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437
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438 @example
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439 @group
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440 @@ifhtml
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441 Text area for HTML only
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442 @@end ifhtml
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443 @end group
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444 @end example
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445
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446 @example
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447 @group
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448 @@tex
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449 Text area for TeX only
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450 @@end tex
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451 @end group
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452 @end example
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453
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454 Note that often @TeX{} output can be used in html documents and so often
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455 the @code{@@ifhtml} blocks are unnecessary. If no specific output
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456 processor is chosen, by default, the text goes into all output
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457 processors. It is usual to have the above blocks in pairs to allow the
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458 same information to be conveyed in all output formats, but with a
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459 different markup. Currently, most Octave documentation only makes a
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460 distinction between @TeX{} and all other formats. Therefore, the
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461 following construct is seen repeatedly.
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462
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463 @example
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464 @group
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465 @@tex
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466 text for TeX only
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467 @@end tex
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468 @@ifnottex
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469 text for info, HTML, plaintext
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470 @@end ifnottex
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471 @end group
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472 @end example
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473
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474 Another important feature of Texinfo that is often used in Octave help
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475 strings is the @code{@@example} environment. An example of its use is
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476
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477 @example
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478 @group
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479 @@example
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480 @@group
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481 @@code@{2 * 2@}
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482 @@result@{@} 4
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483 @@end group
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484 @@end example
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485 @end group
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486 @end example
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487
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488 which produces
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489
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490 @example
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491 @group
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492 @code{2 * 2}
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493 @result{} 4
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494 @end group
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495 @end example
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496
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497 The @code{@@group} block prevents the example from being split across a
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498 page boundary, while the @code{@@result@{@}} macro produces a right
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499 arrow signifying the result of a command. If your example is larger than
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500 20 lines it is better NOT to use grouping so that a reasonable page boundary
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501 can be calculated.
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502
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503 In many cases a function has multiple ways in which it can be called,
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504 and the @code{@@deftypefnx} macro can be used to give alternatives. For
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505 example
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506
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507 @example
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508 @group
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509 -*- texinfo -*-
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510 @@deftypefn@{Function File@} @{@@var@{a@} =@} fn (@@var@{x@}, @dots{})
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511 @@deftypefnx@{Function File@} @{@@var@{a@} =@} fn (@@var@{y@}, @dots{})
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512 Help text in Texinfo format.
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513 @@end deftypefn
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514 @end group
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515 @end example
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516
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517 Many complete examples of Texinfo documentation can be taken from the
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518 help strings for the Octave functions themselves. A relatively complete
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519 example of which is the @code{nchoosek} function. The Texinfo
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520 documentation string for @code{nchoosek} is
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521
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522 @example
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523 -*- texinfo -*-
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524 @@deftypefn @{Function File@} @{@} nchoosek (@@var@{n@}, @@var@{k@})
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525
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526 Compute the binomial coefficient or all combinations of
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527 @@var@{n@}. If @@var@{n@} is a scalar then, calculate the
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528 binomial coefficient of @@var@{n@} and @@var@{k@}, defined as
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529
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530 @@tex
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531 $$
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532 @{n \choose k@} = @{n (n-1) (n-2) \cdots (n-k+1) \over k!@}
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533 $$
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534 @@end tex
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535 @@ifnottex
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536
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537 @@example
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538 @@group
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539 / \
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540 | n | n (n-1) (n-2) @dots{} (n-k+1)
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541 | | = -------------------------
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542 | k | k!
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543 \ /
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544 @@end group
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545 @@end example
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546 @@end ifnottex
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547
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548 If @@var@{n@} is a vector, this generates all combinations
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549 of the elements of @@var@{n@}, taken @@var@{k@} at a time,
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550 one row per combination. The resulting @@var@{c@} has size
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551 @@code@{[nchoosek (length (@@var@{n@}),@@var@{k@}), @@var@{k@}]@}.
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552
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553 @@code@{nchoosek@} works only for non-negative integer arguments; use
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554 @@code@{bincoeff@} for non-integer scalar arguments and for using vector
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555 arguments to compute many coefficients at once.
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556
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557 @@seealso@{bincoeff@}
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558 @@end deftypefn
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559 @end example
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diff changeset
560
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561 which demonstrates most of the concepts discussed above.
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diff changeset
562 @iftex
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563 This documentation string renders as
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564
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565 @c Note actually use the output of info below rather than try and
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566 @c reproduce it here to prevent it looking different than how it would
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567 @c appear with info.
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568 @example
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diff changeset
569 @group
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570 -- Function File: C = nchoosek (N, K)
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571 Compute the binomial coefficient or all combinations
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572 of N. If N is a scalar then, calculate the binomial
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573 coefficient of N and K, defined as
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574
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575 / \
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576 | n | n (n-1) (n-2) @dots{} (n-k+1) n!
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577 | | = ------------------------- = ---------
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578 | k | k! k! (n-k)!
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579 \ /
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580
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581 If N is a vector generate all combinations of the
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582 elements of N, taken K at a time, one row per
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583 combination. The resulting C has size `[nchoosek
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584 (length (N), K), K]'.
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585
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586 `nchoosek' works only for non-negative integer
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587 arguments; use `bincoeff' for non-integer scalar
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588 arguments and for using vector arguments to compute
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589 many coefficients at once.
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590
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591 See also: bincoeff.
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diff changeset
592 @end group
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593 @end example
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594
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595 using info, whereas in a printed documentation using @TeX{} it will appear
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596 as
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597
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598 @deftypefn {Function File} {@var{c} =} nchoosek (@var{n}, @var{k})
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diff changeset
599
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600 Compute the binomial coefficient or all combinations of @var{n}.
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601 If @var{n} is a scalar then, calculate the binomial coefficient
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diff changeset
602 of @var{n} and @var{k}, defined as
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diff changeset
603
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diff changeset
604 @tex
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605 $$
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606 {n \choose k} = {n (n-1) (n-2) \cdots (n-k+1) \over k!}
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607 $$
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608 @end tex
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diff changeset
609
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610 If @var{n} is a vector generate all combinations of the elements
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611 of @var{n}, taken @var{k} at a time, one row per combination. The
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612 resulting @var{c} has size @code{[nchoosek (length (@var{n}),
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diff changeset
613 @var{k}), @var{k}]}.
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diff changeset
614
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615 @code{nchoosek} works only for non-negative integer arguments; use
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616 @code{bincoeff} for non-integer scalar arguments and for using vector
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617 arguments to compute many coefficients at once.
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618
6574
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619 @seealso{bincoeff}
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620 @end deftypefn
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621
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622 @end iftex