annotate scripts/statistics/base/zscore.m @ 12586:f9b7aa3b88f8

Deprecate studentize(), replace with zscore().
author Rik <octave@nomad.inbox5.com>
date Fri, 08 Apr 2011 20:15:19 -0700
parents scripts/statistics/base/studentize.m@c792872f8942
children 6b2f14af2360
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11523
fd0a3ac60b0e update copyright notices
John W. Eaton <jwe@octave.org>
parents: 11436
diff changeset
1 ## Copyright (C) 1995-2011 Kurt Hornik
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3388
diff changeset
2 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3458
diff changeset
3 ## This file is part of Octave.
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3458
diff changeset
4 ##
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3458
diff changeset
5 ## Octave is free software; you can redistribute it and/or modify it
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3458
diff changeset
6 ## under the terms of the GNU General Public License as published by
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6046
diff changeset
7 ## the Free Software Foundation; either version 3 of the License, or (at
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6046
diff changeset
8 ## your option) any later version.
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3388
diff changeset
9 ##
3922
38c61cbf086c [project @ 2002-05-01 06:48:35 by jwe]
jwe
parents: 3458
diff changeset
10 ## Octave is distributed in the hope that it will be useful, but
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
11 ## WITHOUT ANY WARRANTY; without even the implied warranty of
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
12 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3388
diff changeset
13 ## General Public License for more details.
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3388
diff changeset
14 ##
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
15 ## You should have received a copy of the GNU General Public License
7016
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6046
diff changeset
16 ## along with Octave; see the file COPYING. If not, see
93c65f2a5668 [project @ 2007-10-12 06:40:56 by jwe]
jwe
parents: 6046
diff changeset
17 ## <http://www.gnu.org/licenses/>.
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
18
3453
71d2e09c15a2 [project @ 2000-01-18 08:32:09 by jwe]
jwe
parents: 3426
diff changeset
19 ## -*- texinfo -*-
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
20 ## @deftypefn {Function File} {} zscore (@var{x})
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
21 ## @deftypefnx {Function File} {} zscore (@var{x}, @var{dim})
3453
71d2e09c15a2 [project @ 2000-01-18 08:32:09 by jwe]
jwe
parents: 3426
diff changeset
22 ## If @var{x} is a vector, subtract its mean and divide by its standard
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
23 ## deviation.
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
24 ##
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
25 ## If @var{x} is a matrix, do the above along the first non-singleton
11587
c792872f8942 all script files: untabify and strip trailing whitespace
John W. Eaton <jwe@octave.org>
parents: 11523
diff changeset
26 ## dimension.
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
27 ## If the optional argument @var{dim} is given, operate along this dimension.
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
28 ## @seealso{center}
3453
71d2e09c15a2 [project @ 2000-01-18 08:32:09 by jwe]
jwe
parents: 3426
diff changeset
29 ## @end deftypefn
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
30
5428
2a16423e4aa0 [project @ 2005-08-23 18:38:27 by jwe]
jwe
parents: 5307
diff changeset
31 ## Author: KH <Kurt.Hornik@wu-wien.ac.at>
3456
434790acb067 [project @ 2000-01-19 06:58:51 by jwe]
jwe
parents: 3453
diff changeset
32 ## Description: Subtract mean and divide by standard deviation
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
33
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
34 function t = zscore (x, dim)
3426
f8dde1807dee [project @ 2000-01-13 08:40:00 by jwe]
jwe
parents: 3388
diff changeset
35
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
36 if (nargin != 1 && nargin != 2)
6046
34f96dd5441b [project @ 2006-10-10 16:10:25 by jwe]
jwe
parents: 5428
diff changeset
37 print_usage ();
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
38 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
39
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
40 if (! isnumeric(x))
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
41 error ("zscore: X must be a numeric vector or matrix");
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
42 endif
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
43
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
44 if (isinteger (x))
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
45 x = double (x);
10669
cab3b148d4e4 Improve validation of input arguments for base statistics functions.
Rik <octave@nomad.inbox5.com>
parents: 10549
diff changeset
46 endif
cab3b148d4e4 Improve validation of input arguments for base statistics functions.
Rik <octave@nomad.inbox5.com>
parents: 10549
diff changeset
47
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
48 nd = ndims (x);
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
49 sz = size (x);
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
50 if (nargin != 2)
4886
54b076a24718 [project @ 2004-04-30 04:31:51 by jwe]
jwe
parents: 4885
diff changeset
51 ## Find the first non-singleton dimension.
10669
cab3b148d4e4 Improve validation of input arguments for base statistics functions.
Rik <octave@nomad.inbox5.com>
parents: 10549
diff changeset
52 dim = find (sz > 1, 1);
cab3b148d4e4 Improve validation of input arguments for base statistics functions.
Rik <octave@nomad.inbox5.com>
parents: 10549
diff changeset
53 if (isempty (dim))
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
54 dim = 1;
3200
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
55 endif
781c930425fd [project @ 1998-10-29 05:23:08 by jwe]
jwe
parents:
diff changeset
56 else
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
57 if (!(isscalar (dim) && dim == fix (dim))
11149
fe3c3dfc07eb style fix: break lines before && and ||, not after
John W. Eaton <jwe@octave.org>
parents: 10669
diff changeset
58 || !(1 <= dim && dim <= nd))
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
59 error ("zscore: DIM must be an integer and a valid dimension");
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
60 endif
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
61 endif
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
62
4886
54b076a24718 [project @ 2004-04-30 04:31:51 by jwe]
jwe
parents: 4885
diff changeset
63 c = sz(dim);
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
64 if (c == 0)
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
65 t = x;
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
66 else
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
67 idx = ones (1, nd);
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
68 idx(dim) = c;
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
69 t = x - repmat (mean (x, dim), idx);
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
70 t = t ./ repmat (max (cat (dim, std(t, [], dim), ! any (t, dim)), [], dim), idx);
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
71 endif
4885
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
72
28ab079d8f0e [project @ 2004-04-30 04:21:33 by jwe]
jwe
parents: 4030
diff changeset
73 endfunction
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
74
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
75 %!assert(zscore ([1,2,3]), [-1,0,1])
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
76 %!assert(zscore (int8 ([1,2,3])), [-1,0,1])
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
77 #%!assert(zscore (ones (3,2,0,2)), zeros (3,2,0,2))
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
78 %!assert(zscore ([2,0,-2;0,2,0;-2,-2,2]), [1,0,-1;0,1,0;-1,-1,1])
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
79
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
80 %% Test input validation
12586
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
81 %!error zscore ()
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
82 %!error zscore (1, 2, 3)
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
83 %!error zscore ([true true])
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
84 %!error zscore (1, ones(2,2))
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
85 %!error zscore (1, 1.5)
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
86 %!error zscore (1, 0)
f9b7aa3b88f8 Deprecate studentize(), replace with zscore().
Rik <octave@nomad.inbox5.com>
parents: 11587
diff changeset
87 %!error zscore (1, 3)
11436
e151e23f73bc Overhaul base statistics functions and documentation of same.
Rik <octave@nomad.inbox5.com>
parents: 11149
diff changeset
88