Mercurial > octave
annotate scripts/specfun/gammaincinv.m @ 26376:00f796120a6d stable
maint: Update copyright dates in all source files.
author | John W. Eaton <jwe@octave.org> |
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date | Wed, 02 Jan 2019 16:32:43 -0500 |
parents | 6652d3823428 |
children | 9a946e34553c |
rev | line source |
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1 ## Copyright (C) 2017-2019 Michele Ginesi |
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2 ## |
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3 ## This file is part of Octave. |
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4 ## |
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5 ## Octave is free software: you can redistribute it and/or modify it |
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6 ## under the terms of the GNU General Public License as published by |
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7 ## the Free Software Foundation; either version 3 of the License, or |
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8 ## (at your option) any later version. |
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9 ## |
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10 ## Octave is distributed in the hope that it will be useful, but |
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11 ## WITHOUT ANY WARRANTY; without even the implied warranty of |
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12 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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13 ## GNU General Public License for more details. |
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14 ## |
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15 ## You should have received a copy of the GNU General Public License |
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16 ## along with Octave; see the file COPYING. If not, see |
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17 ## <https://www.gnu.org/licenses/>. |
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18 |
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19 ## Author: Michele Ginesi <michele.ginesi@gmail.com> |
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20 |
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21 ## -*- texinfo -*- |
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22 ## @deftypefn {} {} gammaincinv (@var{y}, @var{a}) |
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23 ## @deftypefnx {} {} gammaincinv (@var{y}, @var{a}, @var{tail}) |
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24 ## Compute the inverse of the normalized incomplete gamma function. |
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25 ## |
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26 ## The normalized incomplete gamma function is defined as |
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27 ## @tex |
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28 ## $$ |
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29 ## \gamma (x, a) = {1 \over {\Gamma (a)}}\displaystyle{\int_0^x t^{a-1} e^{-t} dt} |
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30 ## $$ |
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31 ## @end tex |
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32 ## @ifnottex |
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33 ## |
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34 ## @example |
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35 ## @group |
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36 ## x |
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37 ## 1 / |
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38 ## gammainc (x, a) = --------- | exp (-t) t^(a-1) dt |
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39 ## gamma (a) / |
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40 ## t=0 |
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41 ## @end group |
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42 ## @end example |
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43 ## |
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44 ## @end ifnottex |
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45 ## |
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46 ## and @code{gammaincinv (gammainc (@var{x}, @var{a}), @var{a}) = @var{x}} |
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47 ## for each non-negative value of @var{x}. If @var{a} is scalar then |
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48 ## @code{gammaincinv (@var{y}, @var{a})} is returned for each element of |
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49 ## @var{y} and vice versa. |
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50 ## |
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51 ## If neither @var{y} nor @var{a} is scalar then the sizes of @var{y} and |
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52 ## @var{a} must agree, and @code{gammaincinv} is applied element-by-element. |
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53 ## The variable @var{y} must be in the interval @math{[0,1]} while @var{a} must |
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54 ## be real and positive. |
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55 ## |
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56 ## By default, @var{tail} is @qcode{"lower"} and the inverse of the incomplete |
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57 ## gamma function integrated from 0 to @var{x} is computed. If @var{tail} is |
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58 ## @qcode{"upper"}, then the complementary function integrated from @var{x} to |
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59 ## infinity is inverted. |
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60 ## |
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61 ## The function is computed with Newton's method by solving |
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62 ## @tex |
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63 ## $$ |
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64 ## y - \gamma (x, a) = 0 |
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65 ## $$ |
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66 ## @end tex |
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67 ## @ifnottex |
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68 ## |
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69 ## @example |
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70 ## @var{y} - gammainc (@var{x}, @var{a}) = 0 |
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71 ## @end example |
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72 ## |
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73 ## @end ifnottex |
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74 ## |
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75 ## Reference: @nospell{A. Gil, J. Segura, and N. M. Temme}, @cite{Efficient and |
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76 ## accurate algorithms for the computation and inversion of the incomplete |
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77 ## gamma function ratios}, @nospell{SIAM J. Sci. Computing}, pp. A2965--A2981, |
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78 ## Vol 34, 2012. |
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79 ## |
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80 ## @seealso{gammainc, gamma, gammaln} |
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81 ## @end deftypefn |
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82 |
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83 function x = gammaincinv (y, a, tail = "lower") |
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84 |
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85 if (nargin < 2 || nargin > 3) |
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86 print_usage (); |
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87 endif |
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88 |
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89 [err, y, a] = common_size (y, a); |
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90 if (err > 0) |
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91 error ("gammaincinv: Y and A must be of common size or scalars"); |
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92 endif |
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93 |
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94 if (iscomplex (y) || iscomplex (a)) |
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95 error ("gammaincinv: all inputs must be real"); |
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96 endif |
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97 |
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98 ## Remember original shape of data, but convert to column vector for calcs. |
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99 orig_sz = size (y); |
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100 y = y(:); |
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101 a = a(:); |
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102 |
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103 if (any ((y < 0) | (y > 1))) |
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104 error ("gammaincinv: Y must be in the range [0, 1]"); |
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105 endif |
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106 |
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107 if (any (a <= 0)) |
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108 error ("gammaincinv: A must be strictly positive"); |
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109 endif |
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110 |
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111 ## If any of the arguments is single then the output should be as well. |
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112 if (strcmp (class (y), "single") || strcmp (class (a), "single")) |
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113 y = single (y); |
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114 a = single (a); |
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115 endif |
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116 |
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117 ## Convert to floating point if necessary |
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118 if (isinteger (y)) |
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119 y = double (y); |
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120 endif |
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121 if (isinteger (a)) |
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122 a = double (a); |
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123 endif |
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124 |
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125 ## Initialize output array |
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126 x = zeros (size (y), class (y)); |
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127 |
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128 maxit = 20; |
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129 tol = eps (class (y)); |
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130 |
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131 ## Special cases, a = 1 or y = 0, 1. |
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132 |
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133 if (strcmpi (tail, "lower")) |
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134 x(a == 1) = - log (1 - y(a == 1)); |
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135 x(y == 0) = 0; |
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136 x(y == 1) = Inf; |
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137 p = y; |
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138 q = 1 - p; |
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139 elseif (strcmpi (tail, "upper")) |
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140 x(a == 1) = - log (y(a == 1)); |
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141 x(y == 0) = Inf; |
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142 x(y == 1) = 0; |
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143 q = y; |
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144 p = 1 - q; |
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145 else |
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146 error ("gammaincinv: invalid value for TAIL") |
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147 endif |
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148 |
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149 todo = (a != 1) & (y != 0) & (y != 1); |
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150 |
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151 ## Case 1: p small. |
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152 |
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153 i_flag_1 = todo & (p < ((0.2 * (1 + a)) .^ a) ./ gamma (1 + a)); |
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154 |
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155 aa = a(i_flag_1); |
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156 pp = p(i_flag_1); |
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157 |
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158 ## Initial guess. |
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159 |
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160 r = (pp .* gamma (1 + aa)) .^ (1 ./ aa); |
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161 |
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162 c2 = 1 ./ (aa + 1); |
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163 c3 = (3 * aa + 5) ./ (2 * (aa + 1) .^2 .* (aa + 2)); |
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164 c4 = (8 * aa .^ 2 + 33 * aa + 31) ./ (3 * (aa + 1) .^ 3 .* (aa + 2) .* ... |
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165 (aa + 3)); |
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166 c5 = (125 * aa .^ 4 + 1179 * aa .^ 3 + 3971 * aa.^2 + 5661 * aa + 2888) ... |
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167 ./ (24 * (1 + aa) .^4 .* (aa + 2) .^ 2 .* (aa + 3) .* (aa + 4)); |
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168 |
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169 ## FIXME: Would polyval() be better here for more accuracy? |
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170 x0 = r + c2 .* r .^ 2 + c3 .* r .^ 3 + c4 .* r .^4 + c5 .* r .^ 5; |
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171 |
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172 ## For this case we invert the lower version. |
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173 |
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174 F = @(p, a, x) p - gammainc (x, a, "lower"); |
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175 JF = @(a, x) - exp (-gammaln (a) - x + (a - 1) .* log (x)); |
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176 x(i_flag_1) = newton_method (F, JF, pp, aa, x0, tol, maxit); |
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177 |
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178 todo(i_flag_1) = false; |
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179 |
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180 ## Case 2: q small. |
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181 |
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182 i_flag_2 = (q < exp (- 0.5 * a) ./ gamma (1 + a)) & (a > 0) & (a < 10); |
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183 i_flag_2 &= todo; |
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184 |
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185 aa = a(i_flag_2); |
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186 qq = q(i_flag_2); |
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187 |
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188 ## Initial guess. |
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189 |
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190 x0 = (-log (qq) - gammaln (aa)); |
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191 |
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192 ## For this case, we invert the upper version. |
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193 |
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194 F = @(q, a, x) q - gammainc (x, a, "upper"); |
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195 JF = @(a, x) exp (- gammaln (a) - x) .* x .^ (a - 1); |
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196 x(i_flag_2) = newton_method (F, JF, qq, aa, x0, tol, maxit); |
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197 |
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198 todo(i_flag_2) = false; |
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199 |
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200 ## Case 3: a small. |
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201 |
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202 i_flag_3 = todo & ((a > 0) & (a < 1)); |
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203 |
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204 aa = a(i_flag_3); |
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205 pp = p(i_flag_3); |
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206 |
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207 ## Initial guess |
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208 |
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209 xl = (pp .* gamma (aa + 1)) .^ (1 ./ aa); |
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210 x0 = xl; |
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211 |
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212 ## For this case, we invert the lower version. |
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213 |
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214 F = @(p, a, x) p - gammainc (x, a, "lower"); |
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215 JF = @(a, x) - exp (-gammaln (a) - x) .* x .^ (a - 1); |
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216 x(i_flag_3) = newton_method (F, JF, pp, aa, x0, tol, maxit); |
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217 |
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218 todo(i_flag_3) = false; |
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219 |
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220 ## Case 4: a large. |
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221 |
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222 i_flag_4 = todo; |
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223 aa = a(i_flag_4); |
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224 qq = q(i_flag_4); |
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225 |
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226 ## Initial guess |
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227 |
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228 d = 1 ./ (9 * aa); |
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229 t = 1 - d + sqrt (2) * erfcinv (2 * qq) .* sqrt (d); |
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230 x0 = aa .* (t .^ 3); |
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231 |
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232 ## For this case, we invert the upper version. |
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233 |
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234 F = @(q, a, x) q - gammainc (x, a, "upper"); |
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235 JF = @(a, x) exp (- gammaln (a) - x + (a - 1) .* log (x)); |
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236 x(i_flag_4) = newton_method (F, JF, qq, aa, x0, tol, maxit); |
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237 |
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238 ## Restore original shape |
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239 x = reshape (x, orig_sz); |
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240 |
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241 endfunction |
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242 |
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243 ## Subfunction: Newton's Method |
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244 function x = newton_method (F, JF, y, a, x0, tol, maxit); |
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245 l = numel (y); |
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246 res = -F (y, a, x0) ./ JF (a, x0); |
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247 todo = (abs (res) >= tol * abs (x0)); |
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248 x = x0; |
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249 it = 0; |
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250 while (any (todo) && (it++ < maxit)) |
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251 x(todo) += res(todo); |
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252 res(todo) = -F (y(todo), a(todo), x(todo)) ./ JF (a(todo), x(todo)); |
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253 todo = (abs (res) >= tol * abs (x)); |
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254 endwhile |
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255 x += res; |
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256 endfunction |
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257 |
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258 |
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259 %!test |
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260 %! x = [1e-10, 1e-09, 1e-08, 1e-07]; |
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261 %! a = [2, 3, 4]; |
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262 %! [x, a] = ndgrid (x, a); |
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263 %! xx = gammainc (gammaincinv (x, a), a); |
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264 %! assert (xx, x, -3e-14); |
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265 |
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266 %!test |
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267 %! x = [1e-10, 1e-09, 1e-08, 1e-07]; |
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268 %! a = [2, 3, 4]; |
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269 %! [x, a] = ndgrid (x, a); |
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270 %! xx = gammainc (gammaincinv (x, a, "upper"), a, "upper"); |
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271 %! assert (xx, x, -3e-14); |
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272 |
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273 %!test |
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274 %! x = linspace (0, 1)'; |
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275 %! a = [linspace(0.1, 1, 10), 2:5]; |
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276 %! [x, a] = ndgrid (x, a); |
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277 %! xx = gammainc (gammaincinv (x, a), a); |
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278 %! assert (xx, x, -1e-13); |
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279 |
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280 %!test |
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281 %! x = linspace (0, 1)'; |
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282 %! a = [linspace(0.1, 1, 10), 2:5]; |
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283 %! [x, a] = ndgrid (x, a); |
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284 %! xx = gammainc (gammaincinv (x, a, "upper"), a, "upper"); |
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285 %! assert (xx, x, -1e-13); |
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286 |
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287 ## Test the conservation of the input class |
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288 %!assert (class (gammaincinv (0.5, 1)), "double") |
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289 %!assert (class (gammaincinv (single (0.5), 1)), "single") |
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290 %!assert (class (gammaincinv (0.5, single (1))), "single") |
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291 %!assert (class (gammaincinv (int8 (0), 1)), "double") |
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292 %!assert (class (gammaincinv (0.5, int8 (1))), "double") |
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293 %!assert (class (gammaincinv (int8 (0), single (1))), "single") |
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294 %!assert (class (gammaincinv (single (0.5), int8 (1))), "single") |
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295 |
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296 ## Test input validation |
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297 %!error gammaincinv () |
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298 %!error gammaincinv (1) |
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299 %!error gammaincinv (1, 2, 3, 4) |
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300 %!error <must be of common size or scalars> |
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301 %! gammaincinv (ones (2,2), ones (1,2), 1); |
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302 %!error <all inputs must be real> gammaincinv (0.5i, 1) |
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303 %!error <all inputs must be real> gammaincinv (0, 1i) |
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304 %!error <Y must be in the range \[0, 1\]> gammaincinv (-0.1,1) |
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305 %!error <Y must be in the range \[0, 1\]> gammaincinv (1.1,1) |
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306 %!error <Y must be in the range \[0, 1\]> |
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307 %! y = ones (1, 1, 2); |
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308 %! y(1,1,2) = -1; |
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309 %! gammaincinv (y,1); |
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310 %!error <A must be strictly positive> gammaincinv (0.5, 0) |
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311 %!error <A must be strictly positive> |
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312 %! a = ones (1, 1, 2); |
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313 %! a(1,1,2) = 0; |
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314 %! gammaincinv (1,a,1); |
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315 %!error <invalid value for TAIL> gammaincinv (1,2, "foobar") |