annotate libinterp/corefcn/svd.cc @ 23572:0703d31e1ec0

new script for updating test status for fixed bugs * build-aux/update-bug-status.sh: New script. * build-aux/module.mk: New file. * Makefile.am: Include it. * scripts/module.mk (FCN_FILES_WITH_TESTS): New variable.
author John W. Eaton <jwe@octave.org>
date Fri, 09 Jun 2017 17:40:34 -0400
parents b6144e6dda9e
children 1b4f4ec53b4a
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1 /*
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2
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3 Copyright (C) 1996-2017 John W. Eaton
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4
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5 This file is part of Octave.
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6
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7 Octave is free software; you can redistribute it and/or modify it
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8 under the terms of the GNU General Public License as published by
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9 the Free Software Foundation; either version 3 of the License, or
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10 (at your option) any later version.
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11
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12 Octave is distributed in the hope that it will be useful, but
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13 WITHOUT ANY WARRANTY; without even the implied warranty of
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14 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 GNU General Public License for more details.
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16
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17 You should have received a copy of the GNU General Public License
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18 along with Octave; see the file COPYING. If not, see
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19 <http://www.gnu.org/licenses/>.
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20
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21 */
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22
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23 #if defined (HAVE_CONFIG_H)
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24 # include "config.h"
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25 #endif
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26
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27 #include "svd.h"
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28
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29 #include "defun.h"
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30 #include "error.h"
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31 #include "errwarn.h"
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32 #include "ovl.h"
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33 #include "pr-output.h"
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34 #include "utils.h"
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35 #include "variables.h"
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36
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37 static std::string Vsvd_driver = "gesdd";
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38
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39 template <typename T>
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40 static typename octave::math::svd<T>::Type
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41 svd_type (int nargin, int nargout, const octave_value_list & args, const T & A)
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42 {
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43 if (nargout == 0 || nargout == 1)
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44 return octave::math::svd<T>::Type::sigma_only;
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45 else if (nargin == 1)
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46 return octave::math::svd<T>::Type::std;
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47 else
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48 if (! args(1).is_real_scalar ())
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49 return octave::math::svd<T>::Type::economy;
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50 else
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51 {
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52 if (A.rows () > A.columns ())
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53 return octave::math::svd<T>::Type::economy;
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54 else
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55 return octave::math::svd<T>::Type::std;
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56 }
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57 }
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58
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59 template <typename T>
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60 static typename octave::math::svd<T>::Driver
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61 svd_driver (void)
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62 {
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63 return (Vsvd_driver == "gesvd"
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64 ? octave::math::svd<T>::Driver::GESVD
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65 : octave::math::svd<T>::Driver::GESDD);
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66 }
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67
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68 DEFUN (svd, args, nargout,
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69 classes: double single
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70 doc: /* -*- texinfo -*-
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71 @deftypefn {} {@var{s} =} svd (@var{A})
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72 @deftypefnx {} {[@var{U}, @var{S}, @var{V}] =} svd (@var{A})
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73 @deftypefnx {} {[@var{U}, @var{S}, @var{V}] =} svd (@var{A}, "econ")
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74 @deftypefnx {} {[@var{U}, @var{S}, @var{V}] =} svd (@var{A}, 0)
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75 @cindex singular value decomposition
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76 Compute the singular value decomposition of @var{A}
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77 @tex
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78 $$
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79 A = U S V^{\dagger}
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80 $$
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81 @end tex
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82 @ifnottex
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83
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84 @example
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85 A = U*S*V'
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86 @end example
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87
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88 @end ifnottex
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89
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90 The function @code{svd} normally returns only the vector of singular values.
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91 When called with three return values, it computes
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92 @tex
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93 $U$, $S$, and $V$.
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94 @end tex
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95 @ifnottex
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96 @var{U}, @var{S}, and @var{V}.
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97 @end ifnottex
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98 For example,
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99
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100 @example
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101 svd (hilb (3))
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102 @end example
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103
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104 @noindent
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105 returns
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106
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107 @example
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108 @group
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109 ans =
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110
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111 1.4083189
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112 0.1223271
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113 0.0026873
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114 @end group
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115 @end example
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116
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117 @noindent
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118 and
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119
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120 @example
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121 [u, s, v] = svd (hilb (3))
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122 @end example
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123
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124 @noindent
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125 returns
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126
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127 @example
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128 @group
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129 u =
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130
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131 -0.82704 0.54745 0.12766
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132 -0.45986 -0.52829 -0.71375
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133 -0.32330 -0.64901 0.68867
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134
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135 s =
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136
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137 1.40832 0.00000 0.00000
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138 0.00000 0.12233 0.00000
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139 0.00000 0.00000 0.00269
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140
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141 v =
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142
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143 -0.82704 0.54745 0.12766
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144 -0.45986 -0.52829 -0.71375
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145 -0.32330 -0.64901 0.68867
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146 @end group
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147 @end example
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148
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149 When given a second argument that is not 0, @code{svd} returns an economy-sized
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150 decomposition, eliminating the unnecessary rows or columns of @var{U} or
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151 @var{V}.
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152
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153 If the second argument is exactly 0, then the choice of decomposition is based
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154 on the matrix @var{A}. If @var{A} has more rows than columns then an
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155 economy-sized decomposition is returned, otherwise a regular decomposition
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156 is calculated.
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157
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158 Algorithm Notes: When calculating the full decomposition (left and right
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159 singular matrices in addition to singular values) there is a choice of two
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160 routines in @sc{lapack}. The default routine used by Octave is @code{gesdd}
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161 which is 5X faster than the alternative @code{gesvd}, but may use more memory
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162 and may be less accurate for some matrices. See the documentation for
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163 @code{svd_driver} for more information.
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164 @seealso{svd_driver, svds, eig, lu, chol, hess, qr, qz}
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165 @end deftypefn */)
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166 {
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167 int nargin = args.length ();
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168
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169 if (nargin < 1 || nargin > 2 || nargout == 2 || nargout > 3)
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170 print_usage ();
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171
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172 octave_value arg = args(0);
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173
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174 if (arg.ndims () != 2)
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175 error ("svd: A must be a 2-D matrix");
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176
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177 octave_value_list retval;
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178
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179 bool isfloat = arg.is_single_type ();
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180
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181 if (isfloat)
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182 {
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183 if (arg.is_real_type ())
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184 {
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185 FloatMatrix tmp = arg.float_matrix_value ();
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186
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187 if (tmp.any_element_is_inf_or_nan ())
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188 error ("svd: cannot take SVD of matrix containing Inf or NaN values");
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189
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190 octave::math::svd<FloatMatrix> result
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191 (tmp,
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192 svd_type<FloatMatrix> (nargin, nargout, args, tmp),
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193 svd_driver<FloatMatrix> ());
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194
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195 FloatDiagMatrix sigma = result.singular_values ();
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196
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197 if (nargout == 0 || nargout == 1)
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198 retval(0) = sigma.extract_diag ();
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199 else
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200 retval = ovl (result.left_singular_matrix (),
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201 sigma,
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202 result.right_singular_matrix ());
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203 }
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204 else if (arg.is_complex_type ())
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205 {
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206 FloatComplexMatrix ctmp = arg.float_complex_matrix_value ();
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207
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208 if (ctmp.any_element_is_inf_or_nan ())
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209 error ("svd: cannot take SVD of matrix containing Inf or NaN values");
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210
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211 octave::math::svd<FloatComplexMatrix> result
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212 (ctmp,
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213 svd_type<FloatComplexMatrix> (nargin, nargout, args, ctmp),
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214 svd_driver<FloatComplexMatrix> ());
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215
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216 FloatDiagMatrix sigma = result.singular_values ();
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217
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218 if (nargout == 0 || nargout == 1)
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diff changeset
219 retval(0) = sigma.extract_diag ();
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220 else
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221 retval = ovl (result.left_singular_matrix (),
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diff changeset
222 sigma,
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diff changeset
223 result.right_singular_matrix ());
10154
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diff changeset
224 }
2928
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225 }
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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226 else
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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diff changeset
227 {
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228 if (arg.is_real_type ())
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diff changeset
229 {
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diff changeset
230 Matrix tmp = arg.matrix_value ();
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diff changeset
231
21273
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diff changeset
232 if (tmp.any_element_is_inf_or_nan ())
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diff changeset
233 error ("svd: cannot take SVD of matrix containing Inf or NaN values");
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234
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235 octave::math::svd<Matrix> result
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diff changeset
236 (tmp,
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diff changeset
237 svd_type<Matrix> (nargin, nargout, args, tmp),
22317
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diff changeset
238 svd_driver<Matrix> ());
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239
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240 DiagMatrix sigma = result.singular_values ();
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241
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242 if (nargout == 0 || nargout == 1)
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diff changeset
243 retval(0) = sigma.extract_diag ();
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diff changeset
244 else
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diff changeset
245 retval = ovl (result.left_singular_matrix (),
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diff changeset
246 sigma,
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diff changeset
247 result.right_singular_matrix ());
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diff changeset
248 }
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249 else if (arg.is_complex_type ())
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diff changeset
250 {
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diff changeset
251 ComplexMatrix ctmp = arg.complex_matrix_value ();
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diff changeset
252
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253 if (ctmp.any_element_is_inf_or_nan ())
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diff changeset
254 error ("svd: cannot take SVD of matrix containing Inf or NaN values");
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diff changeset
255
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diff changeset
256 octave::math::svd<ComplexMatrix> result
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diff changeset
257 (ctmp,
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diff changeset
258 svd_type<ComplexMatrix> (nargin, nargout, args, ctmp),
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diff changeset
259 svd_driver<ComplexMatrix> ());
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diff changeset
260
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diff changeset
261 DiagMatrix sigma = result.singular_values ();
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diff changeset
262
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diff changeset
263 if (nargout == 0 || nargout == 1)
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diff changeset
264 retval(0) = sigma.extract_diag ();
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diff changeset
265 else
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266 retval = ovl (result.left_singular_matrix (),
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diff changeset
267 sigma,
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diff changeset
268 result.right_singular_matrix ());
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diff changeset
269 }
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diff changeset
270 else
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diff changeset
271 err_wrong_type_arg ("svd", arg);
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272 }
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273
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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274 return retval;
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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diff changeset
275 }
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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276
295f037b4b3e [project @ 1997-05-05 05:32:33 by jwe]
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diff changeset
277 /*
14501
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278 %!assert (svd ([1, 2; 2, 1]), [3; 1], sqrt (eps))
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279
87865ed7405f Second set of single precision test code and fix of resulting bugs
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diff changeset
280 %!test
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diff changeset
281 a = [1, 2; 3, 4] + [5, 6; 7, 8]*i;
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282 [u,s,v] = svd (a);
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283 assert (a, u * s * v', 128 * eps);
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284
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285 %!test
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286 %! [u, s, v] = svd ([1, 2; 2, 1]);
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287 %! x = 1 / sqrt (2);
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288 %! assert (u, [-x, -x; -x, x], sqrt (eps));
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289 %! assert (s, [3, 0; 0, 1], sqrt (eps));
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290 %! assert (v, [-x, x; -x, -x], sqrt (eps));
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291
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292 %!test
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293 %! a = [1, 2, 3; 4, 5, 6];
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294 %! [u, s, v] = svd (a);
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295 %! assert (u * s * v', a, sqrt (eps));
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296
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297 %!test
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298 %! a = [1, 2; 3, 4; 5, 6];
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299 %! [u, s, v] = svd (a);
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300 %! assert (u * s * v', a, sqrt (eps));
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301
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302 %!test
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303 %! a = [1, 2, 3; 4, 5, 6];
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304 %! [u, s, v] = svd (a, 1);
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305 %! assert (u * s * v', a, sqrt (eps));
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306
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307 %!test
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308 %! a = [1, 2; 3, 4; 5, 6];
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309 %! [u, s, v] = svd (a, 1);
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310 %! assert (u * s * v', a, sqrt (eps));
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311
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312 %!assert (svd (single ([1, 2; 2, 1])), single ([3; 1]), sqrt (eps ("single")))
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313
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314 %!test
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315 %! [u, s, v] = svd (single ([1, 2; 2, 1]));
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316 %! x = single (1 / sqrt (2));
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317 %! assert (u, [-x, -x; -x, x], sqrt (eps ("single")));
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318 %! assert (s, single ([3, 0; 0, 1]), sqrt (eps ("single")));
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319 %! assert (v, [-x, x; -x, -x], sqrt (eps ("single")));
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320
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321 %!test
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322 %! a = single ([1, 2, 3; 4, 5, 6]);
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323 %! [u, s, v] = svd (a);
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324 %! assert (u * s * v', a, sqrt (eps ("single")));
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325
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326 %!test
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327 %! a = single ([1, 2; 3, 4; 5, 6]);
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328 %! [u, s, v] = svd (a);
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329 %! assert (u * s * v', a, sqrt (eps ("single")));
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330
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331 %!test
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332 %! a = single ([1, 2, 3; 4, 5, 6]);
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333 %! [u, s, v] = svd (a, 1);
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334 %! assert (u * s * v', a, sqrt (eps ("single")));
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335
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336 %!test
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337 %! a = single ([1, 2; 3, 4; 5, 6]);
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338 %! [u, s, v] = svd (a, 1);
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339 %! assert (u * s * v', a, sqrt (eps ("single")));
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340
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341 %!test
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342 %! a = zeros (0, 5);
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343 %! [u, s, v] = svd (a);
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344 %! assert (size (u), [0, 0]);
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345 %! assert (size (s), [0, 5]);
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346 %! assert (size (v), [5, 5]);
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347
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348 %!test
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349 %! a = zeros (5, 0);
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350 %! [u, s, v] = svd (a, 1);
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351 %! assert (size (u), [5, 0]);
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352 %! assert (size (s), [0, 0]);
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353 %! assert (size (v), [0, 0]);
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354
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355 %!test <49309>
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356 %! [~,~,v] = svd ([1, 1, 1], 0);
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357 %! assert (size (v), [3 3]);
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358 %! [~,~,v] = svd ([1, 1, 1], "econ");
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359 %! assert (size (v), [3 1]);
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360
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361 %!error svd ()
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362 %!error svd ([1, 2; 4, 5], 2, 3)
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363 %!error [u, v] = svd ([1, 2; 3, 4])
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364 */
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365
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366 DEFUN (svd_driver, args, nargout,
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367 doc: /* -*- texinfo -*-
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368 @deftypefn {} {@var{val} =} svd_driver ()
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369 @deftypefnx {} {@var{old_val} =} svd_driver (@var{new_val})
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370 @deftypefnx {} {} svd_driver (@var{new_val}, "local")
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371 Query or set the underlying @sc{lapack} driver used by @code{svd}.
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372
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373 Currently recognized values are @qcode{"gesdd"} and @qcode{"gesvd"}.
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374 The default is @qcode{"gesdd"}.
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375
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376 When called from inside a function with the @qcode{"local"} option, the
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377 variable is changed locally for the function and any subroutines it calls.
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378 The original variable value is restored when exiting the function.
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379
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380 Algorithm Notes: The @sc{lapack} library provides two routines for calculating
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381 the full singular value decomposition (left and right singular matrices as
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382 well as singular values). When calculating just the singular values the
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383 following discussion is not relevant.
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384
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385 The default routine use by Octave is the newer @code{gesdd} which is based on a
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386 Divide-and-Conquer algorithm that is 5X faster than the alternative
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387 @code{gesvd}, which is based on QR factorization. However, the new algorithm
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388 can use significantly more memory. For an @nospell{MxN} input matrix the
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389 memory usage is of order O(min(M,N) ^ 2), whereas the alternative is of order
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390 O(max(M,N)). In general, modern computers have abundant memory so Octave has
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391 chosen to prioritize speed.
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392
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393 In addition, there have been instances in the past where some input matrices
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394 were not accurately decomposed by @code{gesdd}. This appears to have been
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395 resolved with modern versions of @sc{lapack}. However, if certainty is
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396 required the accuracy of the decomposition can always be tested after the fact
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397 with
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398
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399 @example
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400 @group
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401 [@var{u}, @var{s}, @var{v}] = svd (@var{x});
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402 norm (@var{x} - @var{u}*@var{s}*@var{v'}, "fro")
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403 @end group
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404 @end example
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405
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406 @seealso{svd}
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407 @end deftypefn */)
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408 {
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409 static const char *driver_names[] = { "gesvd", "gesdd", 0 };
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410
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parents: 10601
diff changeset
411 return SET_INTERNAL_VARIABLE_CHOICES (svd_driver, driver_names);
10601
3ce0c530a9c9 implement svd_driver
Jaroslav Hajek <highegg@gmail.com>
parents: 10185
diff changeset
412 }
15887
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
413
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
414 /*
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
415 %!test
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
416 %! A = [1+1i, 1-1i, 0; 0, 2, 0; 1i, 1i, 1+2i];
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
417 %! old_driver = svd_driver ("gesvd");
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
418 %! [U1, S1, V1] = svd (A);
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
419 %! svd_driver ("gesdd");
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
420 %! [U2, S2, V2] = svd (A);
22977
750c8b4b7164 Switch svd_driver to gesdd for performance (bug #49940).
Rik <rik@octave.org>
parents: 22893
diff changeset
421 %! svd_driver (old_driver);
15887
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
422 %! assert (U1, U2, 5*eps);
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
423 %! assert (S1, S2, 5*eps);
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
424 %! assert (V1, V2, 5*eps);
8ced82e96b48 Fix segfaults with gesdd driver for svd (bug #37998).
Rik <rik@octave.org>
parents: 14138
diff changeset
425 */