Mercurial > octave
annotate scripts/optimization/lsqnonneg.m @ 28789:28de41192f3c
Eliminate unneeded verification of nargin, nargout in m-files.
* FIRfilter.m, FIRfilter_aggregation.m, get.m, polynomial.m,
polynomial_superiorto.m, polynomial2.m, makeUniqueStrings.m, base64decode.m,
base64encode.m, cd.m, lin2mu.m, record.m, sound.m, soundsc.m, accumarray.m,
accumdim.m, bitcmp.m, bitset.m, cart2pol.m, celldisp.m, circshift.m,
cplxpair.m, cumtrapz.m, flip.m, idivide.m, interpft.m, logspace.m, pol2cart.m,
polyarea.m, postpad.m, prepad.m, rat.m, rot90.m, rotdim.m, shift.m, shiftdim.m,
sortrows.m, trapz.m, dsearch.m, dsearchn.m, getappdata.m, getpixelposition.m,
guidata.m, guihandles.m, isappdata.m, listfonts.m, uigetdir.m,
waitforbuttonpress.m, __makeinfo__.m, doc.m, get_first_help_sentence.m,
autumn.m, bone.m, brighten.m, cmpermute.m, cmunique.m, colorcube.m, contrast.m,
cool.m, copper.m, cubehelix.m, flag.m, gray.m, gray2ind.m, hot.m, hsv.m,
im2double.m, im2frame.m, imformats.m, jet.m, lines.m, ocean.m, pink.m, prism.m,
rainbow.m, rgbplot.m, spinmap.m, spring.m, summer.m, viridis.m, white.m,
winter.m, beep.m, importdata.m, is_valid_file_id.m, javachk.m, javaclasspath.m,
findstr.m, genvarname.m, strmatch.m, bandwidth.m, commutation_matrix.m, cond.m,
cross.m, isdefinite.m, ishermitian.m, issymmetric.m, krylov.m, linsolve.m,
logm.m, lscov.m, null.m, ordeig.m, orth.m, rank.m, rref.m, vecnorm.m,
bunzip2.m, citation.m, computer.m, copyfile.m, dir.m, dos.m, fileattrib.m,
gunzip.m, inputParser.m, inputname.m, ismac.m, ispc.m, isunix.m, license.m,
list_primes.m, methods.m, mkdir.m, movefile.m, nargchk.m, news.m,
orderfields.m, recycle.m, tar.m, unix.m, unpack.m, untar.m, unzip.m, ver.m,
version.m, what.m, zip.m, decic.m, fminbnd.m, fminunc.m, fsolve.m, fzero.m,
glpk.m, humps.m, lsqnonneg.m, optimget.m, pqpnonneg.m, sqp.m, pathdef.m,
camlookat.m, hidden.m, specular.m, plotmatrix.m, smooth3.m, sombrero.m,
stemleaf.m, __gnuplot_drawnow__.m, __opengl_info__.m, ancestor.m, cla.m,
close.m, closereq.m, copyobj.m, gca.m, gcf.m, ginput.m, graphics_toolkit.m,
groot.m, hgload.m, hgsave.m, isgraphics.m, ishold.m, linkaxes.m, meshgrid.m,
newplot.m, refresh.m, refreshdata.m, rotate.m, saveas.m, struct2hdl.m, conv.m,
mkpp.m, mpoles.m, padecoef.m, pchip.m, polyder.m, polyfit.m, polygcd.m,
polyint.m, polyout.m, polyval.m, ppder.m, ppint.m, getpref.m, ispref.m,
rmpref.m, profexport.m, profshow.m, powerset.m, arch_fit.m, arma_rnd.m,
blackman.m, detrend.m, diffpara.m, fftconv.m, fftfilt.m, filter2.m, freqz.m,
freqz_plot.m, hamming.m, hanning.m, sinetone.m, sinewave.m, spectral_adf.m,
spectral_xdf.m, stft.m, unwrap.m, gplot.m, ichol.m, ilu.m, spdiags.m, sprand.m,
sprandn.m, spstats.m, svds.m, treelayout.m, treeplot.m, betainc.m,
betaincinv.m, ellipke.m, gammainc.m, gammaincinv.m, legendre.m, pow2.m,
hankel.m, pascal.m, rosser.m, toeplitz.m, bounds.m, corr.m, cov.m, histc.m,
kendall.m, kurtosis.m, mad.m, mode.m, moment.m, prctile.m, quantile.m, range.m,
ranks.m, run_count.m, skewness.m, spearman.m, std.m, var.m, zscore.m,
dec2base.m, dec2bin.m, dec2hex.m, index.m, mat2str.m, native2unicode.m,
ostrsplit.m, strjoin.m, strjust.m, strtok.m, substr.m, unicode2native.m,
untabify.m, __debug_octave__.m, demo.m, example.m, fail.m, oruntests.m,
dump_demos.m, speed.m, test.m, date.m, datenum.m, datestr.m, datevec.m,
is_leap_year.m, now.m, weekday.m:
Eliminate unneeded verification of nargin, nargout in m-files now that
the interpreter checks these values.
author | Rik <rik@octave.org> |
---|---|
date | Thu, 24 Sep 2020 14:44:58 -0700 |
parents | bd51beb6205e |
children | 90fea9cc9caa |
rev | line source |
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1 ######################################################################## |
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2 ## |
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3 ## Copyright (C) 2008-2020 The Octave Project Developers |
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4 ## |
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5 ## See the file COPYRIGHT.md in the top-level directory of this |
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6 ## distribution or <https://octave.org/copyright/>. |
7682 | 7 ## |
8 ## This file is part of Octave. | |
9 ## | |
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10 ## Octave is free software: you can redistribute it and/or modify it |
7682 | 11 ## under the terms of the GNU General Public License as published by |
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12 ## the Free Software Foundation, either version 3 of the License, or |
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13 ## (at your option) any later version. |
7682 | 14 ## |
15 ## Octave is distributed in the hope that it will be useful, but | |
16 ## WITHOUT ANY WARRANTY; without even the implied warranty of | |
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17 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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18 ## GNU General Public License for more details. |
7682 | 19 ## |
20 ## You should have received a copy of the GNU General Public License | |
21 ## along with Octave; see the file COPYING. If not, see | |
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22 ## <https://www.gnu.org/licenses/>. |
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23 ## |
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24 ######################################################################## |
7682 | 25 |
26 ## -*- texinfo -*- | |
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27 ## @deftypefn {} {@var{x} =} lsqnonneg (@var{c}, @var{d}) |
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28 ## @deftypefnx {} {@var{x} =} lsqnonneg (@var{c}, @var{d}, @var{x0}) |
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29 ## @deftypefnx {} {@var{x} =} lsqnonneg (@var{c}, @var{d}, @var{x0}, @var{options}) |
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30 ## @deftypefnx {} {[@var{x}, @var{resnorm}] =} lsqnonneg (@dots{}) |
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31 ## @deftypefnx {} {[@var{x}, @var{resnorm}, @var{residual}] =} lsqnonneg (@dots{}) |
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32 ## @deftypefnx {} {[@var{x}, @var{resnorm}, @var{residual}, @var{exitflag}] =} lsqnonneg (@dots{}) |
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33 ## @deftypefnx {} {[@var{x}, @var{resnorm}, @var{residual}, @var{exitflag}, @var{output}] =} lsqnonneg (@dots{}) |
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34 ## @deftypefnx {} {[@var{x}, @var{resnorm}, @var{residual}, @var{exitflag}, @var{output}, @var{lambda}] =} lsqnonneg (@dots{}) |
22769 | 35 ## |
36 ## Minimize @code{norm (@var{c}*@var{x} - @var{d})} subject to | |
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37 ## @code{@var{x} >= 0}. |
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38 ## |
22769 | 39 ## @var{c} and @var{d} must be real matrices. |
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40 ## |
22769 | 41 ## @var{x0} is an optional initial guess for the solution @var{x}. |
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42 ## |
22769 | 43 ## @var{options} is an options structure to change the behavior of the |
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44 ## algorithm (@pxref{XREFoptimset,,optimset}). @code{lsqnonneg} recognizes |
22769 | 45 ## these options: @qcode{"MaxIter"}, @qcode{"TolX"}. |
7682 | 46 ## |
47 ## Outputs: | |
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48 ## |
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49 ## @table @var |
7682 | 50 ## @item resnorm |
22769 | 51 ## The squared 2-norm of the residual: @code{norm (@var{c}*@var{x}-@var{d})^2} |
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52 ## |
7682 | 53 ## @item residual |
22769 | 54 ## The residual: @code{@var{d}-@var{c}*@var{x}} |
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55 ## |
7682 | 56 ## @item exitflag |
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57 ## An indicator of convergence. 0 indicates that the iteration count was |
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58 ## exceeded, and therefore convergence was not reached; >0 indicates that the |
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59 ## algorithm converged. (The algorithm is stable and will converge given |
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60 ## enough iterations.) |
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61 ## |
7682 | 62 ## @item output |
63 ## A structure with two fields: | |
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64 ## |
7682 | 65 ## @itemize @bullet |
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66 ## @item @qcode{"algorithm"}: The algorithm used (@qcode{"nnls"}) |
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67 ## |
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68 ## @item @qcode{"iterations"}: The number of iterations taken. |
7682 | 69 ## @end itemize |
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70 ## |
7682 | 71 ## @item lambda |
22769 | 72 ## @c FIXME: Something is output from the function, but what is it? |
73 ## Undocumented output | |
74 ## @end table | |
75 ## @seealso{pqpnonneg, lscov, optimset} | |
7682 | 76 ## @end deftypefn |
77 | |
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78 ## PKG_ADD: ## Discard result to avoid polluting workspace with ans at startup. |
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79 ## PKG_ADD: [~] = __all_opts__ ("lsqnonneg"); |
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80 |
22769 | 81 ## This is implemented from Lawson and Hanson's 1973 algorithm on page 161 of |
82 ## Solving Least Squares Problems. | |
7682 | 83 |
22769 | 84 function [x, resnorm, residual, exitflag, output, lambda] = lsqnonneg (c, d, |
85 x0 = [], | |
86 options = struct ()) | |
8600 | 87 |
22769 | 88 ## Special case: called to find default optimization options |
89 if (nargin == 1 && ischar (c) && strcmp (c, "defaults")) | |
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90 x = struct ("MaxIter", 1e5); |
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91 return; |
8600 | 92 endif |
93 | |
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94 if (nargin < 2) |
8600 | 95 print_usage (); |
96 endif | |
7682 | 97 |
22769 | 98 if (! (isnumeric (c) && ismatrix (c)) || ! (isnumeric (d) && ismatrix (d))) |
99 error ("lsqnonneg: C and D must be numeric matrices"); | |
100 endif | |
101 | |
102 if (! isstruct (options)) | |
103 error ("lsqnonneg: OPTIONS must be a struct"); | |
104 endif | |
105 | |
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106 ## Lawson-Hanson Step 1 (LH1): initialize the variables. |
8600 | 107 m = rows (c); |
108 n = columns (c); | |
22769 | 109 if (isempty (x0)) |
110 ## Initial guess is all zeros. | |
8600 | 111 x = zeros (n, 1); |
112 else | |
113 ## ensure nonnegative guess. | |
22769 | 114 x = max (x0, 0); |
7682 | 115 endif |
116 | |
22769 | 117 useqr = (m >= n); |
8507 | 118 max_iter = optimget (options, "MaxIter", 1e5); |
7682 | 119 |
8600 | 120 ## Initialize P, according to zero pattern of x. |
121 p = find (x > 0).'; | |
122 if (useqr) | |
123 ## Initialize the QR factorization, economized form. | |
124 [q, r] = qr (c(:,p), 0); | |
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125 endif |
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126 |
7682 | 127 iter = 0; |
8600 | 128 |
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129 ## LH3: test for completion. |
8600 | 130 while (iter < max_iter) |
131 while (iter < max_iter) | |
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132 iter += 1; |
8600 | 133 |
134 ## LH6: compute the positive matrix and find the min norm solution | |
135 ## of the positive problem. | |
136 if (useqr) | |
137 xtmp = r \ q'*d; | |
138 else | |
139 xtmp = c(:,p) \ d; | |
140 endif | |
141 idx = find (xtmp < 0); | |
142 | |
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143 if (isempty (idx)) |
8600 | 144 ## LH7: tmp solution found, iterate. |
145 x(:) = 0; | |
146 x(p) = xtmp; | |
147 break; | |
148 else | |
149 ## LH8, LH9: find the scaling factor. | |
150 pidx = p(idx); | |
22769 | 151 sf = x(pidx) ./ (x(pidx) - xtmp(idx)); |
8600 | 152 alpha = min (sf); |
153 ## LH10: adjust X. | |
154 xx = zeros (n, 1); | |
155 xx(p) = xtmp; | |
156 x += alpha*(xx - x); | |
157 ## LH11: move from P to Z all X == 0. | |
158 ## This corresponds to those indices where minimum of sf is attained. | |
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159 idx = idx(sf == alpha); |
8600 | 160 p(idx) = []; |
161 if (useqr) | |
162 ## update the QR factorization. | |
163 [q, r] = qrdelete (q, r, idx); | |
164 endif | |
165 endif | |
166 endwhile | |
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167 |
8600 | 168 ## compute the gradient. |
169 w = c'*(d - c*x); | |
170 w(p) = []; | |
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171 tolx = optimget (options, "TolX", 10*eps*norm (c, 1)*length (c)); |
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172 if (! any (w > tolx)) |
8600 | 173 if (useqr) |
174 ## verify the solution achieved using qr updating. | |
175 ## in the best case, this should only take a single step. | |
176 useqr = false; | |
177 continue; | |
178 else | |
179 ## we're finished. | |
180 break; | |
181 endif | |
182 endif | |
183 | |
184 ## find the maximum gradient. | |
7682 | 185 idx = find (w == max (w)); |
186 if (numel (idx) > 1) | |
187 warning ("lsqnonneg:nonunique", | |
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188 "a non-unique solution may be returned due to equal gradients"); |
7682 | 189 idx = idx(1); |
190 endif | |
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191 ## move the index from Z to P. Keep P sorted. |
8600 | 192 z = [1:n]; z(p) = []; |
193 zidx = z(idx); | |
194 jdx = 1 + lookup (p, zidx); | |
195 p = [p(1:jdx-1), zidx, p(jdx:end)]; | |
196 if (useqr) | |
197 ## insert the column into the QR factorization. | |
198 [q, r] = qrinsert (q, r, jdx, c(:,zidx)); | |
199 endif | |
7682 | 200 |
201 endwhile | |
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202 ## LH12: complete. |
7682 | 203 |
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204 ## Generate the additional output arguments. |
22769 | 205 if (isargout (2)) |
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206 resnorm = norm (c*x - d) ^ 2; |
7682 | 207 endif |
22769 | 208 if (isargout (3)) |
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209 residual = d - c*x; |
7682 | 210 endif |
22769 | 211 if (isargout (4)) |
212 if (iter >= max_iter) | |
213 exitflag = 0; | |
214 else | |
215 exitflag = iter; | |
216 endif | |
7682 | 217 endif |
22769 | 218 if (isargout (5)) |
7682 | 219 output = struct ("algorithm", "nnls", "iterations", iter); |
220 endif | |
22769 | 221 if (isargout (6)) |
8600 | 222 lambda = zeros (size (x)); |
223 lambda(p) = w; | |
7682 | 224 endif |
225 | |
226 endfunction | |
227 | |
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228 |
7682 | 229 %!test |
230 %! C = [1 0;0 1;2 1]; | |
231 %! d = [1;3;-2]; | |
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232 %! assert (lsqnonneg (C, d), [0;0.5], 100*eps); |
7682 | 233 |
234 %!test | |
235 %! C = [0.0372 0.2869;0.6861 0.7071;0.6233 0.6245;0.6344 0.6170]; | |
236 %! d = [0.8587;0.1781;0.0747;0.8405]; | |
237 %! xnew = [0;0.6929]; | |
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238 %! assert (lsqnonneg (C, d), xnew, 0.0001); |
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239 |
22769 | 240 # Test input validation |
241 %!error lsqnonneg () | |
242 %!error lsqnonneg (1) | |
243 %!error lsqnonneg (1,2,3,4,5) | |
244 %!error <C .* must be numeric matrices> lsqnonneg ({1},2) | |
245 %!error <C .* must be numeric matrices> lsqnonneg (ones (2,2,2),2) | |
246 %!error <D must be numeric matrices> lsqnonneg (1,{2}) | |
247 %!error <D must be numeric matrices> lsqnonneg (1, ones (2,2,2)) | |
248 %!error <OPTIONS must be a struct> lsqnonneg (1, 2, [], 3) |