annotate liboctave/numeric/sparse-chol.cc @ 22317:6ca3acf5fad8

move some new numeric classes to namespace octave::math * aepbalance.cc, aepbalance.h, chol.cc, chol.h, gepbalance.cc, gepbalance.h, hess.cc, hess.h, lu.cc, lu.h, qr.cc, qr.h, qrp.cc, qrp.h, schur.cc, schur.h, sparse-chol.cc, sparse-chol.h, sparse-dmsolve.cc,sparse-lu.cc, sparse-lu.h, sparse-qr.cc, sparse-qr.h, svd.cc, svd.h: Move classes to namespace octave::math. * __luinc__.cc, __qp__.cc, balance.cc, hess.cc, lu.cc, qz.cc, schur.cc, sqrtm.cc, svd.cc, chol.cc, dmperm.cc, qr.cc, lex.h, CMatrix.cc, CSparse.cc, dMatrix.cc, dSparse.cc, fCMatrix.cc, fMatrix.cc, eigs-base.cc, oct-norm.cc: Update for new namespaces.
author John W. Eaton <jwe@octave.org>
date Tue, 16 Aug 2016 15:48:22 -0400
parents 5417dad26a25
children bac0d6f07a3e
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1 /*
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2
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3 Copyright (C) 2016 John W. Eaton
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4 Copyright (C) 2005-2015 David Bateman
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5 Copyright (C) 1998-2005 Andy Adler
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6
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7 This file is part of Octave.
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8
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9 Octave is free software; you can redistribute it and/or modify it
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10 under the terms of the GNU General Public License as published by the
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11 Free Software Foundation; either version 3 of the License, or (at your
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12 option) any later version.
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13
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14 Octave is distributed in the hope that it will be useful, but WITHOUT
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15 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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16 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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17 for more details.
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18
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19 You should have received a copy of the GNU General Public License
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20 along with Octave; see the file COPYING. If not, see
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21 <http://www.gnu.org/licenses/>.
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22
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23 */
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24
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25 #if defined (HAVE_CONFIG_H)
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26 # include "config.h"
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27 #endif
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29 #include "sparse-chol.h"
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30 #include "sparse-util.h"
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31 #include "lo-error.h"
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32 #include "oct-sparse.h"
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33 #include "oct-spparms.h"
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34 #include "quit.h"
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35 #include "MatrixType.h"
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36
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37 namespace octave
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38 {
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39 namespace math
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40 {
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41
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42 template <typename chol_type>
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43 class sparse_chol<chol_type>::sparse_chol_rep
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44 {
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45 public:
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46
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47 sparse_chol_rep (void)
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48 : count (1), is_pd (false), minor_p (0), perms (), cond (0)
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49 #if defined (HAVE_CHOLMOD)
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50 , Lsparse (0), Common ()
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51 #endif
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52 { }
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53
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54 sparse_chol_rep (const chol_type& a, bool natural, bool force)
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55 : count (1), is_pd (false), minor_p (0), perms (), cond (0)
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56 #if defined (HAVE_CHOLMOD)
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57 , Lsparse (0), Common ()
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58 #endif
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59 {
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60 init (a, natural, force);
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61 }
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62
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63 sparse_chol_rep (const chol_type& a, octave_idx_type& info,
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64 bool natural, bool force)
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65 : count (1), is_pd (false), minor_p (0), perms (), cond (0)
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66 #if defined (HAVE_CHOLMOD)
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67 , Lsparse (0), Common ()
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68 #endif
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69 {
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70 info = init (a, natural, force);
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71 }
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72
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73 ~sparse_chol_rep (void)
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74 {
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75 #if defined (HAVE_CHOLMOD)
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76 if (Lsparse)
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77 CHOLMOD_NAME (free_sparse) (&Lsparse, &Common);
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78
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79 CHOLMOD_NAME(finish) (&Common);
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80 #endif
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81 }
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82
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83 #if defined (HAVE_CHOLMOD)
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84 cholmod_sparse *L (void) const
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85 {
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86 return Lsparse;
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87 }
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88 #endif
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89
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90 octave_idx_type P (void) const
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91 {
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92 #if defined (HAVE_CHOLMOD)
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93 return (minor_p == static_cast<octave_idx_type>(Lsparse->ncol) ?
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94 0 : minor_p + 1);
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95 #else
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96 return 0;
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97 #endif
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98 }
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99
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100 RowVector perm (void) const { return perms + 1; }
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101
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102 SparseMatrix Q (void) const;
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103
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104 bool is_positive_definite (void) const { return is_pd; }
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105
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106 double rcond (void) const { return cond; }
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107
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108 octave_refcount<int> count;
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109
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110 private:
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111
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112 bool is_pd;
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113
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114 octave_idx_type minor_p;
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115
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116 RowVector perms;
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117
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118 double cond;
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119
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120 #if defined (HAVE_CHOLMOD)
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121 cholmod_sparse *Lsparse;
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122
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123 cholmod_common Common;
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124
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125 void drop_zeros (const cholmod_sparse *S);
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126 #endif
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127
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128 octave_idx_type init (const chol_type& a, bool natural, bool force);
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129
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130 // No copying!
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131
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132 sparse_chol_rep (const sparse_chol_rep&);
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133
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134 sparse_chol_rep& operator = (const sparse_chol_rep&);
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135 };
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136
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137 #if defined (HAVE_CHOLMOD)
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138
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139 // Can't use CHOLMOD_NAME(drop)(0.0, S, cm) because it doesn't treat
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140 // complex matrices.
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141
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142 template <typename chol_type>
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143 void
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144 sparse_chol<chol_type>::sparse_chol_rep::drop_zeros (const cholmod_sparse *S)
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145 {
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146 if (! S)
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147 return;
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148
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149 octave_idx_type *Sp = static_cast<octave_idx_type *>(S->p);
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150 octave_idx_type *Si = static_cast<octave_idx_type *>(S->i);
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151 chol_elt *Sx = static_cast<chol_elt *>(S->x);
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152
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153 octave_idx_type pdest = 0;
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154 octave_idx_type ncol = S->ncol;
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155
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156 for (octave_idx_type k = 0; k < ncol; k++)
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157 {
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158 octave_idx_type p = Sp[k];
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159 octave_idx_type pend = Sp[k+1];
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160 Sp[k] = pdest;
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161
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162 for (; p < pend; p++)
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163 {
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164 chol_elt sik = Sx[p];
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165
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166 if (CHOLMOD_IS_NONZERO (sik))
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167 {
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168 if (p != pdest)
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169 {
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170 Si[pdest] = Si[p];
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171 Sx[pdest] = sik;
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172 }
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173
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174 pdest++;
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175 }
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176 }
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177 }
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178
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179 Sp[ncol] = pdest;
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180 }
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181
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182 // Must provide a specialization for this function.
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183 template <typename T>
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184 int
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185 get_xtype (void);
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186
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187 template <>
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188 inline int
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189 get_xtype<double> (void)
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190 {
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191 return CHOLMOD_REAL;
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192 }
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193
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194 template <>
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195 inline int
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196 get_xtype<Complex> (void)
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197 {
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198 return CHOLMOD_COMPLEX;
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199 }
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200
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201 #endif
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202
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203 template <typename chol_type>
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204 octave_idx_type
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205 sparse_chol<chol_type>::sparse_chol_rep::init (const chol_type& a,
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206 bool natural, bool force)
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207 {
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208 volatile octave_idx_type info = 0;
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209
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210 #if defined (HAVE_CHOLMOD)
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211
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212 octave_idx_type a_nr = a.rows ();
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213 octave_idx_type a_nc = a.cols ();
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214
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215 if (a_nr != a_nc)
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216 (*current_liboctave_error_handler) ("sparse_chol requires square matrix");
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217
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218 cholmod_common *cm = &Common;
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219
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220 // Setup initial parameters
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221
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222 CHOLMOD_NAME(start) (cm);
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223 cm->prefer_zomplex = false;
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224
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225 double spu = octave_sparse_params::get_key ("spumoni");
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226
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227 if (spu == 0.)
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228 {
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229 cm->print = -1;
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230 SUITESPARSE_ASSIGN_FPTR (printf_func, cm->print_function, 0);
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231 }
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232 else
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233 {
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234 cm->print = static_cast<int> (spu) + 2;
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235 SUITESPARSE_ASSIGN_FPTR (printf_func, cm->print_function, &SparseCholPrint);
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236 }
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237
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238 cm->error_handler = &SparseCholError;
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239
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240 SUITESPARSE_ASSIGN_FPTR2 (divcomplex_func, cm->complex_divide, divcomplex);
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241 SUITESPARSE_ASSIGN_FPTR2 (hypot_func, cm->hypotenuse, hypot);
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242
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243 cm->final_asis = false;
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244 cm->final_super = false;
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245 cm->final_ll = true;
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246 cm->final_pack = true;
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247 cm->final_monotonic = true;
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248 cm->final_resymbol = false;
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249
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250 cholmod_sparse A;
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251 cholmod_sparse *ac = &A;
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252 double dummy;
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253
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254 ac->nrow = a_nr;
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255 ac->ncol = a_nc;
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256
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257 ac->p = a.cidx ();
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258 ac->i = a.ridx ();
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259 ac->nzmax = a.nnz ();
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260 ac->packed = true;
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261 ac->sorted = true;
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262 ac->nz = 0;
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263 #if defined (OCTAVE_ENABLE_64)
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264 ac->itype = CHOLMOD_LONG;
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265 #else
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266 ac->itype = CHOLMOD_INT;
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267 #endif
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268 ac->dtype = CHOLMOD_DOUBLE;
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269 ac->stype = 1;
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270 ac->xtype = get_xtype<chol_elt> ();
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271
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272 if (a_nr < 1)
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273 ac->x = &dummy;
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274 else
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275 ac->x = a.data ();
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276
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277 // use natural ordering if no q output parameter
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278 if (natural)
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279 {
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280 cm->nmethods = 1;
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281 cm->method[0].ordering = CHOLMOD_NATURAL;
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282 cm->postorder = false;
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283 }
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284
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285 cholmod_factor *Lfactor;
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286 BEGIN_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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287 Lfactor = CHOLMOD_NAME(analyze) (ac, cm);
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288 CHOLMOD_NAME(factorize) (ac, Lfactor, cm);
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289 END_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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290
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291 is_pd = cm->status == CHOLMOD_OK;
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292 info = (is_pd ? 0 : cm->status);
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293
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294 if (is_pd || force)
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295 {
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296 BEGIN_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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297 cond = CHOLMOD_NAME(rcond) (Lfactor, cm);
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298 END_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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299
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300 minor_p = Lfactor->minor;
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301
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302 BEGIN_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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303 Lsparse = CHOLMOD_NAME(factor_to_sparse) (Lfactor, cm);
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304 END_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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305
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306 if (minor_p > 0 && minor_p < a_nr)
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307 {
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308 size_t n1 = a_nr + 1;
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309 Lsparse->p = CHOLMOD_NAME(realloc) (minor_p+1,
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310 sizeof(octave_idx_type),
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311 Lsparse->p, &n1, cm);
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312 BEGIN_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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313 CHOLMOD_NAME(reallocate_sparse)
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314 (static_cast<octave_idx_type *>(Lsparse->p)[minor_p], Lsparse, cm);
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315 END_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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316
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317 Lsparse->ncol = minor_p;
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318 }
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319
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320 drop_zeros (Lsparse);
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321
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322 if (! natural)
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323 {
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324 perms.resize (a_nr);
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325 for (octave_idx_type i = 0; i < a_nr; i++)
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326 perms(i) = static_cast<octave_idx_type *>(Lfactor->Perm)[i];
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327 }
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328 }
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329
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330 // NAME used to prefix statistics report from print_common
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331 static char blank_name[] = " ";
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332
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333 BEGIN_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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334 CHOLMOD_NAME(print_common) (blank_name, cm);
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335 CHOLMOD_NAME(free_factor) (&Lfactor, cm);
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336 END_INTERRUPT_IMMEDIATELY_IN_FOREIGN_CODE;
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337
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338 return info;
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339
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340 #else
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341
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342 octave_unused_parameter (a);
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343 octave_unused_parameter (natural);
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344 octave_unused_parameter (force);
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345
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346 (*current_liboctave_error_handler)
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347 ("support for CHOLMOD was unavailable or disabled when liboctave was built");
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348
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349 return info;
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350
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351 #endif
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352 }
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353
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354 template <typename chol_type>
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355 SparseMatrix
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356 sparse_chol<chol_type>::sparse_chol_rep::Q (void) const
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357 {
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358 #if defined (HAVE_CHOLMOD)
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359
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360 octave_idx_type n = Lsparse->nrow;
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361 SparseMatrix p (n, n, n);
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362
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363 for (octave_idx_type i = 0; i < n; i++)
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364 {
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365 p.xcidx (i) = i;
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366 p.xridx (i) = static_cast<octave_idx_type>(perms (i));
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367 p.xdata (i) = 1;
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368 }
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369
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370 p.xcidx (n) = n;
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diff changeset
371
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372 return p;
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373
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374 #else
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375
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376 return SparseMatrix ();
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377
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diff changeset
378 #endif
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diff changeset
379 }
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diff changeset
380
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diff changeset
381 template <typename chol_type>
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diff changeset
382 sparse_chol<chol_type>::sparse_chol (void)
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383 : rep (new typename sparse_chol<chol_type>::sparse_chol_rep ())
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diff changeset
384 { }
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diff changeset
385
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diff changeset
386 template <typename chol_type>
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diff changeset
387 sparse_chol<chol_type>::sparse_chol (const chol_type& a, bool natural,
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diff changeset
388 bool force)
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diff changeset
389 : rep (new typename
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diff changeset
390 sparse_chol<chol_type>::sparse_chol_rep (a, natural, force))
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diff changeset
391 { }
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diff changeset
392
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diff changeset
393 template <typename chol_type>
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diff changeset
394 sparse_chol<chol_type>::sparse_chol (const chol_type& a, octave_idx_type& info,
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diff changeset
395 bool natural, bool force)
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diff changeset
396 : rep (new typename
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diff changeset
397 sparse_chol<chol_type>::sparse_chol_rep (a, info, natural, force))
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diff changeset
398 { }
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diff changeset
399
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diff changeset
400 template <typename chol_type>
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diff changeset
401 sparse_chol<chol_type>::sparse_chol (const chol_type& a, octave_idx_type& info,
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diff changeset
402 bool natural)
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diff changeset
403 : rep (new typename
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diff changeset
404 sparse_chol<chol_type>::sparse_chol_rep (a, info, natural, false))
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diff changeset
405 { }
307096fb67e1 revamp sparse Cholesky factorization classes
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diff changeset
406
307096fb67e1 revamp sparse Cholesky factorization classes
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diff changeset
407 template <typename chol_type>
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diff changeset
408 sparse_chol<chol_type>::sparse_chol (const chol_type& a, octave_idx_type& info)
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diff changeset
409 : rep (new typename
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diff changeset
410 sparse_chol<chol_type>::sparse_chol_rep (a, info, false, false))
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diff changeset
411 { }
307096fb67e1 revamp sparse Cholesky factorization classes
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diff changeset
412
307096fb67e1 revamp sparse Cholesky factorization classes
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parents: 21140
diff changeset
413 template <typename chol_type>
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diff changeset
414 sparse_chol<chol_type>::sparse_chol (const sparse_chol<chol_type>& a)
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diff changeset
415 : rep (a.rep)
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diff changeset
416 {
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diff changeset
417 rep->count++;
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diff changeset
418 }
307096fb67e1 revamp sparse Cholesky factorization classes
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diff changeset
419
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diff changeset
420 template <typename chol_type>
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diff changeset
421 sparse_chol<chol_type>::~sparse_chol (void)
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422 {
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diff changeset
423 if (--rep->count == 0)
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diff changeset
424 delete rep;
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diff changeset
425 }
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diff changeset
426
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diff changeset
427 template <typename chol_type>
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diff changeset
428 sparse_chol<chol_type>&
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parents: 21140
diff changeset
429 sparse_chol<chol_type>::operator = (const sparse_chol& a)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
430 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
431 if (this != &a)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
432 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
433 if (--rep->count == 0)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
434 delete rep;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
435
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
436 rep = a.rep;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
437 rep->count++;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
438 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
439
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
440 return *this;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
441 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
442
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
443 template <typename chol_type>
11586
12df7854fa7c strip trailing whitespace from source files
John W. Eaton <jwe@octave.org>
parents: 11523
diff changeset
444 chol_type
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
445 sparse_chol<chol_type>::L (void) const
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
446 {
21724
aba2e6293dd8 use "#if ..." consistently instead of "#ifdef" and "#ifndef"
John W. Eaton <jwe@octave.org>
parents: 21691
diff changeset
447 #if defined (HAVE_CHOLMOD)
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
448
14846
460a3c6d8bf1 maint: Use Octave coding convention for cuddled parenthis in function calls with empty argument lists.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
449 cholmod_sparse *m = rep->L ();
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
450
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
451 octave_idx_type nc = m->ncol;
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
452 octave_idx_type nnz = m->nzmax;
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
453
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
454 chol_type ret (m->nrow, nc, nnz);
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
455
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
456 for (octave_idx_type j = 0; j < nc+1; j++)
15018
3d8ace26c5b4 maint: Use Octave coding conventions for cuddled parentheses in liboctave/.
Rik <rik@octave.org>
parents: 14846
diff changeset
457 ret.xcidx (j) = static_cast<octave_idx_type *>(m->p)[j];
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
458
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
459 for (octave_idx_type i = 0; i < nnz; i++)
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
460 {
15018
3d8ace26c5b4 maint: Use Octave coding conventions for cuddled parentheses in liboctave/.
Rik <rik@octave.org>
parents: 14846
diff changeset
461 ret.xridx (i) = static_cast<octave_idx_type *>(m->i)[i];
3d8ace26c5b4 maint: Use Octave coding conventions for cuddled parentheses in liboctave/.
Rik <rik@octave.org>
parents: 14846
diff changeset
462 ret.xdata (i) = static_cast<chol_elt *>(m->x)[i];
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
463 }
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
464
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
465 return ret;
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
466
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
467 #else
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
468
14846
460a3c6d8bf1 maint: Use Octave coding convention for cuddled parenthis in function calls with empty argument lists.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
469 return chol_type ();
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
470
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
471 #endif
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
472 }
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
473
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
474 template <typename chol_type>
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
475 octave_idx_type
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
476 sparse_chol<chol_type>::P (void) const
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
477 {
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
478 return rep->P ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
479 }
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
480
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
481 template <typename chol_type>
22229
22c2bd440544 chol: return permutation vector as row vector instead of column vector.
Carnë Draug <carandraug@octave.org>
parents: 21724
diff changeset
482 RowVector
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
483 sparse_chol<chol_type>::perm (void) const
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
484 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
485 return rep->perm ();
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
486 }
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
487
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
488 template <typename chol_type>
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
489 SparseMatrix
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
490 sparse_chol<chol_type>::Q (void) const
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
491 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
492 return rep->Q ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
493 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
494
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
495 template <typename chol_type>
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
496 bool
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
497 sparse_chol<chol_type>::is_positive_definite (void) const
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
498 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
499 return rep->is_positive_definite ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
500 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
501
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
502 template <typename chol_type>
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
503 double
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
504 sparse_chol<chol_type>::rcond (void) const
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
505 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
506 return rep->rcond ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
507 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
508
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
509 template <typename chol_type>
11586
12df7854fa7c strip trailing whitespace from source files
John W. Eaton <jwe@octave.org>
parents: 11523
diff changeset
510 chol_type
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
511 sparse_chol<chol_type>::inverse (void) const
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
512 {
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
513 chol_type retval;
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
514
21724
aba2e6293dd8 use "#if ..." consistently instead of "#ifdef" and "#ifndef"
John W. Eaton <jwe@octave.org>
parents: 21691
diff changeset
515 #if defined (HAVE_CHOLMOD)
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
516
14846
460a3c6d8bf1 maint: Use Octave coding convention for cuddled parenthis in function calls with empty argument lists.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
517 cholmod_sparse *m = rep->L ();
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
518 octave_idx_type n = m->ncol;
22229
22c2bd440544 chol: return permutation vector as row vector instead of column vector.
Carnë Draug <carandraug@octave.org>
parents: 21724
diff changeset
519 RowVector perms = rep->perm ();
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
520 double rcond2;
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
521 octave_idx_type info;
5785
6b9cec830d72 [project @ 2006-05-03 19:32:46 by dbateman]
dbateman
parents: 5760
diff changeset
522 MatrixType mattype (MatrixType::Upper);
15018
3d8ace26c5b4 maint: Use Octave coding conventions for cuddled parentheses in liboctave/.
Rik <rik@octave.org>
parents: 14846
diff changeset
523 chol_type linv = L ().hermitian ().inverse (mattype, info, rcond2, 1, 0);
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
524
20232
a9574e3c6e9e Deprecate Array::length() and Sparse::length() in favour of ::numel().
Carnë Draug <carandraug@octave.org>
parents: 19697
diff changeset
525 if (perms.numel () == n)
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
526 {
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
527 SparseMatrix Qc = Q ();
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
528
14846
460a3c6d8bf1 maint: Use Octave coding convention for cuddled parenthis in function calls with empty argument lists.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
529 retval = Qc * linv * linv.hermitian () * Qc.transpose ();
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
530 }
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
531 else
8402
2176f2b4599e Fix sparse cholesky inversion
David Bateman <dbateman@free.fr>
parents: 7637
diff changeset
532 retval = linv * linv.hermitian ();
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
533
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
534 #endif
21177
a10f60e13243 style fixes in liboctave/numeric directory
John W. Eaton <jwe@octave.org>
parents: 21145
diff changeset
535
5506
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
536 return retval;
b4cfbb0ec8c4 [project @ 2005-10-23 19:09:32 by dbateman]
dbateman
parents:
diff changeset
537 }
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
538
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
539 template <typename chol_type>
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
540 chol_type
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
541 chol2inv (const chol_type& r)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
542 {
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
543 octave_idx_type r_nr = r.rows ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
544 octave_idx_type r_nc = r.cols ();
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
545 chol_type retval;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
546
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
547 if (r_nr != r_nc)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
548 (*current_liboctave_error_handler) ("U must be a square matrix");
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
549
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
550 MatrixType mattype (r);
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
551 int typ = mattype.type (false);
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
552 double rcond;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
553 octave_idx_type info;
22242
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
554 chol_type rtra, multip;
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
555
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
556 if (typ == MatrixType::Upper)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
557 {
22242
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
558 rtra = r.transpose ();
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
559 multip = (rtra*r);
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
560 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
561 else if (typ == MatrixType::Lower)
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
562 {
22242
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
563 rtra = r.transpose ();
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
564 multip = (r*rtra);
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
565 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
566 else
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
567 (*current_liboctave_error_handler) ("U must be a triangular matrix");
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
568
22242
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
569 MatrixType mattypenew (multip);
5417dad26a25 chol2inv: "inv (Y'*Y)" instead of "(inv(Y))' * inv(Y)" (bug #36437)
Barbara Locsi <locsi.barbara@gmail.com>
parents: 22229
diff changeset
570 retval = multip.inverse (mattypenew, info, rcond, true, false);
21145
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
571 return retval;
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
572 }
307096fb67e1 revamp sparse Cholesky factorization classes
John W. Eaton <jwe@octave.org>
parents: 21140
diff changeset
573
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574 // SparseComplexMatrix specialization (the value for the NATURAL
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575 // parameter in the sparse_chol<T>::sparse_chol_rep constructor is
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576 // different from the default).
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577
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578 template <>
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579 sparse_chol<SparseComplexMatrix>::sparse_chol (const SparseComplexMatrix& a,
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580 octave_idx_type& info)
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581 : rep (
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582 new sparse_chol<SparseComplexMatrix>::sparse_chol_rep (a, info, true, false))
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583 { }
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584
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585 // Instantiations we need.
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586
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587 template class sparse_chol<SparseMatrix>;
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588
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589 template class sparse_chol<SparseComplexMatrix>;
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590
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591 template SparseMatrix
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592 chol2inv<SparseMatrix> (const SparseMatrix& r);
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593
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594 template SparseComplexMatrix
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595 chol2inv<SparseComplexMatrix> (const SparseComplexMatrix& r);
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596
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597 }
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598 }