Mercurial > octave
annotate libinterp/dldfcn/amd.cc @ 20898:8da80da1ac37
maint: Use ovl() more places in the code.
author | Rik <rik@octave.org> |
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date | Mon, 14 Dec 2015 17:53:27 -0800 |
parents | 1142cf6abc0d |
children | b17fda023ca6 |
rev | line source |
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7619 | 1 /* |
2 | |
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3 Copyright (C) 2008-2015 David Bateman |
7619 | 4 |
5 This file is part of Octave. | |
6 | |
7 Octave is free software; you can redistribute it and/or modify it | |
8 under the terms of the GNU General Public License as published by the | |
9 Free Software Foundation; either version 3 of the License, or (at your | |
10 option) any later version. | |
11 | |
12 Octave is distributed in the hope that it will be useful, but WITHOUT | |
13 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or | |
14 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License | |
15 for more details. | |
16 | |
17 You should have received a copy of the GNU General Public License | |
18 along with Octave; see the file COPYING. If not, see | |
19 <http://www.gnu.org/licenses/>. | |
20 | |
21 */ | |
22 | |
23 // This is the octave interface to amd, which bore the copyright given | |
24 // in the help of the functions. | |
25 | |
26 #ifdef HAVE_CONFIG_H | |
27 #include <config.h> | |
28 #endif | |
29 | |
30 #include <cstdlib> | |
31 | |
32 #include <string> | |
33 #include <vector> | |
34 | |
35 #include "ov.h" | |
36 #include "defun-dld.h" | |
37 #include "pager.h" | |
38 #include "ov-re-mat.h" | |
39 | |
40 #include "ov-re-sparse.h" | |
41 #include "ov-cx-sparse.h" | |
42 #include "oct-map.h" | |
43 | |
44 #include "oct-sparse.h" | |
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45 #include "oct-locbuf.h" |
7619 | 46 |
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47 #ifdef USE_64_BIT_IDX_T |
7619 | 48 #define AMD_NAME(name) amd_l ## name |
49 #else | |
50 #define AMD_NAME(name) amd ## name | |
51 #endif | |
52 | |
53 DEFUN_DLD (amd, args, nargout, | |
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54 "-*- texinfo -*-\n\ |
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55 @deftypefn {} {@var{p} =} amd (@var{S})\n\ |
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56 @deftypefnx {} {@var{p} =} amd (@var{S}, @var{opts})\n\ |
7619 | 57 \n\ |
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58 Return the approximate minimum degree permutation of a matrix.\n\ |
7619 | 59 \n\ |
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60 This is a permutation such that the Cholesky@tie{}factorization of\n\ |
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61 @code{@var{S} (@var{p}, @var{p})} tends to be sparser than the\n\ |
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62 Cholesky@tie{}factorization of @var{S} itself. @code{amd} is typically\n\ |
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63 faster than @code{symamd} but serves a similar purpose.\n\ |
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64 \n\ |
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65 The optional parameter @var{opts} is a structure that controls the behavior\n\ |
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66 of @code{amd}. The fields of the structure are\n\ |
7619 | 67 \n\ |
68 @table @asis\n\ | |
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69 @item @var{opts}.dense\n\ |
7619 | 70 Determines what @code{amd} considers to be a dense row or column of the\n\ |
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71 input matrix. Rows or columns with more than @code{max (16, (dense *\n\ |
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72 sqrt (@var{n})))} entries, where @var{n} is the order of the matrix @var{S},\n\ |
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73 are ignored by @code{amd} during the calculation of the permutation.\n\ |
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74 The value of dense must be a positive scalar and the default value is 10.0\n\ |
7619 | 75 \n\ |
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76 @item @var{opts}.aggressive\n\ |
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77 If this value is a nonzero scalar, then @code{amd} performs aggressive\n\ |
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78 absorption. The default is not to perform aggressive absorption.\n\ |
7619 | 79 @end table\n\ |
80 \n\ | |
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81 The author of the code itself is Timothy A. Davis\n\ |
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82 @email{davis@@cise.ufl.edu}, University of Florida\n\ |
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83 (see @url{http://www.cise.ufl.edu/research/sparse/amd}).\n\ |
7619 | 84 @seealso{symamd, colamd}\n\ |
85 @end deftypefn") | |
86 { | |
87 #ifdef HAVE_AMD | |
88 int nargin = args.length (); | |
89 | |
90 if (nargin < 1 || nargin > 2) | |
91 print_usage (); | |
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92 |
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93 octave_idx_type n_row, n_col; |
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94 const octave_idx_type *ridx, *cidx; |
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95 SparseMatrix sm; |
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96 SparseComplexMatrix scm; |
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97 |
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98 if (args(0).is_sparse_type ()) |
7619 | 99 { |
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100 if (args(0).is_complex_type ()) |
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101 { |
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102 scm = args(0).sparse_complex_matrix_value (); |
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103 n_row = scm.rows (); |
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104 n_col = scm.cols (); |
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105 ridx = scm.xridx (); |
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106 cidx = scm.xcidx (); |
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107 } |
7619 | 108 else |
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109 { |
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110 sm = args(0).sparse_matrix_value (); |
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111 n_row = sm.rows (); |
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112 n_col = sm.cols (); |
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113 ridx = sm.xridx (); |
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114 cidx = sm.xcidx (); |
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115 } |
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116 } |
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117 else |
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118 { |
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119 if (args(0).is_complex_type ()) |
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120 sm = SparseMatrix (real (args(0).complex_matrix_value ())); |
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121 else |
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122 sm = SparseMatrix (args(0).matrix_value ()); |
7619 | 123 |
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124 n_row = sm.rows (); |
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125 n_col = sm.cols (); |
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126 ridx = sm.xridx (); |
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127 cidx = sm.xcidx (); |
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128 } |
7619 | 129 |
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130 if (n_row != n_col) |
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131 error ("amd: matrix S must be square"); |
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132 |
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133 OCTAVE_LOCAL_BUFFER (double, Control, AMD_CONTROL); |
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134 AMD_NAME (_defaults) (Control) ; |
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135 if (nargin > 1) |
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136 { |
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137 octave_scalar_map arg1 = args(1).xscalar_map_value ("amd: OPTS argument must be a scalar structure"); |
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138 |
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139 octave_value tmp; |
7619 | 140 |
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141 tmp = arg1.getfield ("dense"); |
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142 if (tmp.is_defined ()) |
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143 Control[AMD_DENSE] = tmp.double_value (); |
7619 | 144 |
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145 tmp = arg1.getfield ("aggressive"); |
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146 if (tmp.is_defined ()) |
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147 Control[AMD_AGGRESSIVE] = tmp.double_value (); |
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148 } |
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150 OCTAVE_LOCAL_BUFFER (octave_idx_type, P, n_col); |
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151 Matrix xinfo (AMD_INFO, 1); |
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152 double *Info = xinfo.fortran_vec (); |
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153 |
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154 // FIXME: how can we manage the memory allocation of amd |
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155 // in a cleaner manner? |
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156 SUITESPARSE_ASSIGN_FPTR (malloc_func, amd_malloc, malloc); |
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157 SUITESPARSE_ASSIGN_FPTR (free_func, amd_free, free); |
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158 SUITESPARSE_ASSIGN_FPTR (calloc_func, amd_calloc, calloc); |
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159 SUITESPARSE_ASSIGN_FPTR (realloc_func, amd_realloc, realloc); |
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160 SUITESPARSE_ASSIGN_FPTR (printf_func, amd_printf, printf); |
7619 | 161 |
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162 octave_idx_type result = AMD_NAME (_order) (n_col, cidx, ridx, P, |
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163 Control, Info); |
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164 |
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165 if (result == AMD_OUT_OF_MEMORY) |
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166 error ("amd: out of memory"); |
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167 else if (result == AMD_INVALID) |
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168 error ("amd: matrix S is corrupted"); |
7619 | 169 |
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170 Matrix Pout (1, n_col); |
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171 for (octave_idx_type i = 0; i < n_col; i++) |
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172 Pout.xelem (i) = P[i] + 1; |
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173 |
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174 if (nargout > 1) |
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175 return ovl (Pout, xinfo); |
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176 else |
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177 return ovl (Pout); |
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178 |
7619 | 179 #else |
180 | |
181 error ("amd: not available in this version of Octave"); | |
182 | |
183 #endif | |
184 } | |
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185 /* |
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186 %!shared A, A2, opts |
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187 %! A = ones (20, 30); |
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188 %! A2 = ones (30, 30); |
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189 %! |
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190 %!testif HAVE_AMD |
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191 %! assert(amd (A2), [1:30]) |
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192 %! opts.dense = 25; |
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193 %! assert(amd (A2, opts), [1:30]) |
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194 %! opts.aggressive = 1; |
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195 %! assert(amd (A2, opts), [1:30]) |
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196 |
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197 %!error <matrix S must be square|not available in this version> amd (A) |
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198 %!error amd (A2, 2) |
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199 %!error <matrix S is corrupted|not available in this version> amd ([]) |
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200 */ |