annotate libinterp/dldfcn/symbfact.cc @ 21229:a83e7a384ee0

create and install a subset of config.h in octave-config.h * mk-octave-config-h.sh: New file. * Makefile.am (EXTRA_DIST): Add mk-octave-config.h.sh to the list. (octinclude_HEADERS): Add octave-config.h to the list. (octave-config.h): New rule. * common.mk (do_subst_config_vals, do_subst_cross_config_vals): Don't substitute unused ENABLE options. * configure.ac: Note the reason for using oct-conf-post.in.h. Add OCTAVE_ prefix to ENABLE_BOUNDS_CHECK ENABLE_ATOMIC_REFCOUNT, ENABLE_64, ENABLE_OPENMP, and ENABLE_FLOAT_TRUNCATE in calls to AC_DEFINE. Change all uses. * oct-conf-post.in.h: Define HAVE_OCTAVE_DEPRECATED_ATTR instead of HAVE_ATTR_DEPRECATED. Likewise for HAVE_ATTR_NORETURN and HAVE_ATTR_UNUSED. Change all uses.
author John W. Eaton <jwe@octave.org>
date Mon, 08 Feb 2016 17:30:29 -0500
parents fcac5dbbf9ed
children 40de9f8f23a6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 /*
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2
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3 Copyright (C) 2005-2015 David Bateman
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4 Copyright (C) 1998-2005 Andy Adler
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5
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6 This file is part of Octave.
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7
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8 Octave is free software; you can redistribute it and/or modify it
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9 under the terms of the GNU General Public License as published by the
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10 Free Software Foundation; either version 3 of the License, or (at your
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11 option) any later version.
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12
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13 Octave is distributed in the hope that it will be useful, but WITHOUT
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14 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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15 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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16 for more details.
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17
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18 You should have received a copy of the GNU General Public License
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19 along with Octave; see the file COPYING. If not, see
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20 <http://www.gnu.org/licenses/>.
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21
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22 */
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23
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24 #ifdef HAVE_CONFIG_H
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25 # include <config.h>
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26 #endif
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27
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28 #include "oct-locbuf.h"
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29 #include "oct-sparse.h"
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30 #include "oct-spparms.h"
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31 #include "sparse-chol.h"
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32 #include "sparse-util.h"
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33
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34 #include "ov-re-sparse.h"
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35 #include "ov-cx-sparse.h"
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36 #include "defun-dld.h"
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37 #include "error.h"
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38 #include "errwarn.h"
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39 #include "ovl.h"
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40 #include "utils.h"
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41
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42 DEFUN_DLD (symbfact, args, nargout,
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43 "-*- texinfo -*-\n\
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44 @deftypefn {} {[@var{count}, @var{h}, @var{parent}, @var{post}, @var{r}] =} symbfact (@var{S})\n\
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45 @deftypefnx {} {[@dots{}] =} symbfact (@var{S}, @var{typ})\n\
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46 @deftypefnx {} {[@dots{}] =} symbfact (@var{S}, @var{typ}, @var{mode})\n\
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47 \n\
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48 Perform a symbolic factorization analysis on the sparse matrix @var{S}.\n\
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49 \n\
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50 The input variables are\n\
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51 \n\
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52 @table @var\n\
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53 @item S\n\
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54 @var{S} is a complex or real sparse matrix.\n\
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55 \n\
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56 @item typ\n\
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57 Is the type of the factorization and can be one of\n\
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58 \n\
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59 @table @samp\n\
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60 @item sym\n\
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61 Factorize @var{S}. This is the default.\n\
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62 \n\
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63 @item col\n\
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64 Factorize @code{@var{S}' * @var{S}}.\n\
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65 \n\
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66 @item row\n\
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67 Factorize @tcode{@var{S} * @var{S}'}.\n\
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68 \n\
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69 @item lo\n\
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70 Factorize @tcode{@var{S}'}\n\
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71 @end table\n\
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72 \n\
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73 @item mode\n\
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74 The default is to return the Cholesky@tie{}factorization for @var{r}, and if\n\
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75 @var{mode} is @qcode{'L'}, the conjugate transpose of the\n\
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76 Cholesky@tie{}factorization is returned. The conjugate transpose version is\n\
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77 faster and uses less memory, but returns the same values for @var{count},\n\
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78 @var{h}, @var{parent} and @var{post} outputs.\n\
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79 @end table\n\
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80 \n\
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81 The output variables are\n\
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82 \n\
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83 @table @var\n\
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84 @item count\n\
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85 The row counts of the Cholesky@tie{}factorization as determined by @var{typ}.\n\
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86 \n\
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87 @item h\n\
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88 The height of the elimination tree.\n\
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89 \n\
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90 @item parent\n\
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91 The elimination tree itself.\n\
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92 \n\
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93 @item post\n\
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94 A sparse boolean matrix whose structure is that of the Cholesky\n\
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95 factorization as determined by @var{typ}.\n\
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96 @end table\n\
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97 @end deftypefn")
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98 {
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99 #ifdef HAVE_CHOLMOD
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100
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101 int nargin = args.length ();
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102
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103 if (nargin < 1 || nargin > 3 || nargout > 5)
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104 print_usage ();
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105
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106 octave_value_list retval;
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107
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108 cholmod_common Common;
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109 cholmod_common *cm = &Common;
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110 CHOLMOD_NAME(start) (cm);
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111
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112 double spu = octave_sparse_params::get_key ("spumoni");
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113 if (spu == 0.)
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114 {
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115 cm->print = -1;
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116 SUITESPARSE_ASSIGN_FPTR (printf_func, cm->print_function, 0);
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117 }
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118 else
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119 {
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120 cm->print = static_cast<int> (spu) + 2;
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121 SUITESPARSE_ASSIGN_FPTR (printf_func, cm->print_function, &SparseCholPrint);
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122 }
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123
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124 cm->error_handler = &SparseCholError;
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125 SUITESPARSE_ASSIGN_FPTR2 (divcomplex_func, cm->complex_divide, divcomplex);
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126 SUITESPARSE_ASSIGN_FPTR2 (hypot_func, cm->hypotenuse, hypot);
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127
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128 double dummy;
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129 cholmod_sparse Astore;
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130 cholmod_sparse *A = &Astore;
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131 A->packed = true;
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132 A->sorted = true;
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133 A->nz = 0;
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134 #if defined (OCTAVE_ENABLE_64)
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135 A->itype = CHOLMOD_LONG;
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136 #else
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diff changeset
137 A->itype = CHOLMOD_INT;
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diff changeset
138 #endif
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diff changeset
139 A->dtype = CHOLMOD_DOUBLE;
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diff changeset
140 A->stype = 1;
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diff changeset
141 A->x = &dummy;
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142
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143 if (args(0).is_real_type ())
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144 {
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diff changeset
145 const SparseMatrix a = args(0).sparse_matrix_value ();
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diff changeset
146 A->nrow = a.rows ();
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147 A->ncol = a.cols ();
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diff changeset
148 A->p = a.cidx ();
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diff changeset
149 A->i = a.ridx ();
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150 A->nzmax = a.nnz ();
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151 A->xtype = CHOLMOD_REAL;
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152
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153 if (a.rows () > 0 && a.cols () > 0)
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154 A->x = a.data ();
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155 }
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156 else if (args(0).is_complex_type ())
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157 {
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158 const SparseComplexMatrix a = args(0).sparse_complex_matrix_value ();
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diff changeset
159 A->nrow = a.rows ();
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160 A->ncol = a.cols ();
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161 A->p = a.cidx ();
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162 A->i = a.ridx ();
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diff changeset
163 A->nzmax = a.nnz ();
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164 A->xtype = CHOLMOD_COMPLEX;
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165
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166 if (a.rows () > 0 && a.cols () > 0)
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167 A->x = a.data ();
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168 }
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169 else
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170 err_wrong_type_arg ("symbfact", args(0));
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171
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172 octave_idx_type coletree = false;
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173 octave_idx_type n = A->nrow;
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174
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175 if (nargin > 1)
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176 {
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177 char ch;
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178 std::string str = args(1).string_value ();
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179 ch = tolower (str.c_str ()[0]);
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180 if (ch == 'r')
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181 A->stype = 0;
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182 else if (ch == 'c')
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183 {
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184 n = A->ncol;
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185 coletree = true;
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186 A->stype = 0;
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diff changeset
187 }
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188 else if (ch == 's')
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189 A->stype = 1;
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190 else if (ch == 's')
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diff changeset
191 A->stype = -1;
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192 else
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01f703952eff Improve docstrings for functions in DLD-FUNCTIONS directory.
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diff changeset
193 error ("symbfact: unrecognized TYP in symbolic factorization");
5506
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194 }
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195
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196 if (A->stype && A->nrow != A->ncol)
21110
3d0d84305600 Use err_square_matrix_required more widely.
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diff changeset
197 err_square_matrix_required ("symbfact", "S");
5506
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198
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diff changeset
199 OCTAVE_LOCAL_BUFFER (octave_idx_type, Parent, n);
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diff changeset
200 OCTAVE_LOCAL_BUFFER (octave_idx_type, Post, n);
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diff changeset
201 OCTAVE_LOCAL_BUFFER (octave_idx_type, ColCount, n);
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diff changeset
202 OCTAVE_LOCAL_BUFFER (octave_idx_type, First, n);
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diff changeset
203 OCTAVE_LOCAL_BUFFER (octave_idx_type, Level, n);
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diff changeset
204
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diff changeset
205 cholmod_sparse *F = CHOLMOD_NAME(transpose) (A, 0, cm);
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diff changeset
206 cholmod_sparse *Aup, *Alo;
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diff changeset
207
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diff changeset
208 if (A->stype == 1 || coletree)
5506
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diff changeset
209 {
20667
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diff changeset
210 Aup = A ;
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diff changeset
211 Alo = F ;
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diff changeset
212 }
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diff changeset
213 else
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diff changeset
214 {
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diff changeset
215 Aup = F ;
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diff changeset
216 Alo = A ;
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diff changeset
217 }
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diff changeset
218
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diff changeset
219 CHOLMOD_NAME(etree) (Aup, Parent, cm);
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diff changeset
220
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diff changeset
221 if (cm->status < CHOLMOD_OK)
20726
25d676f9619c Preface error() messages with name of function when possible.
Rik <rik@octave.org>
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diff changeset
222 error ("symbfact: matrix corrupted");
5506
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diff changeset
223
20667
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diff changeset
224 if (CHOLMOD_NAME(postorder) (Parent, n, 0, Post, cm) != n)
20726
25d676f9619c Preface error() messages with name of function when possible.
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diff changeset
225 error ("symbfact: postorder failed");
20667
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diff changeset
226
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diff changeset
227 CHOLMOD_NAME(rowcolcounts) (Alo, 0, 0, Parent, Post, 0,
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diff changeset
228 ColCount, First, Level, cm);
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diff changeset
229
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diff changeset
230 if (cm->status < CHOLMOD_OK)
20726
25d676f9619c Preface error() messages with name of function when possible.
Rik <rik@octave.org>
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diff changeset
231 error ("symbfact: matrix corrupted");
20667
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diff changeset
232
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diff changeset
233 if (nargout > 4)
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diff changeset
234 {
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diff changeset
235 cholmod_sparse *A1, *A2;
5506
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diff changeset
236
20667
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diff changeset
237 if (A->stype == 1)
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diff changeset
238 {
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diff changeset
239 A1 = A;
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diff changeset
240 A2 = 0;
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diff changeset
241 }
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diff changeset
242 else if (A->stype == -1)
10154
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diff changeset
243 {
20667
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diff changeset
244 A1 = F;
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diff changeset
245 A2 = 0;
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diff changeset
246 }
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diff changeset
247 else if (coletree)
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diff changeset
248 {
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diff changeset
249 A1 = F;
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diff changeset
250 A2 = A;
10154
40dfc0c99116 DLD-FUNCTIONS/*.cc: untabify
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diff changeset
251 }
5506
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diff changeset
252 else
10154
40dfc0c99116 DLD-FUNCTIONS/*.cc: untabify
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diff changeset
253 {
20667
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diff changeset
254 A1 = A;
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diff changeset
255 A2 = F;
10154
40dfc0c99116 DLD-FUNCTIONS/*.cc: untabify
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diff changeset
256 }
5506
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diff changeset
257
20667
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diff changeset
258 // count the total number of entries in L
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diff changeset
259 octave_idx_type lnz = 0 ;
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diff changeset
260 for (octave_idx_type j = 0 ; j < n ; j++)
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diff changeset
261 lnz += ColCount[j];
11586
12df7854fa7c strip trailing whitespace from source files
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parents: 11553
diff changeset
262
5506
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diff changeset
263
20667
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diff changeset
264 // allocate the output matrix L (pattern-only)
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diff changeset
265 SparseBoolMatrix L (n, n, lnz);
5506
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diff changeset
266
20667
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diff changeset
267 // initialize column pointers
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diff changeset
268 lnz = 0;
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diff changeset
269 for (octave_idx_type j = 0 ; j < n ; j++)
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diff changeset
270 {
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diff changeset
271 L.xcidx(j) = lnz;
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diff changeset
272 lnz += ColCount[j];
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diff changeset
273 }
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diff changeset
274 L.xcidx(n) = lnz;
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275
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276
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277 // create a copy of the column pointers
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278 octave_idx_type *W = First;
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279 for (octave_idx_type j = 0 ; j < n ; j++)
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280 W[j] = L.xcidx (j);
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281
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282 // get workspace for computing one row of L
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283 cholmod_sparse *R
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284 = CHOLMOD_NAME (allocate_sparse) (n, 1, n, false, true,
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285 0, CHOLMOD_PATTERN, cm);
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286 octave_idx_type *Rp = static_cast<octave_idx_type *>(R->p);
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287 octave_idx_type *Ri = static_cast<octave_idx_type *>(R->i);
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288
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289 // compute L one row at a time
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290 for (octave_idx_type k = 0 ; k < n ; k++)
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291 {
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292 // get the kth row of L and store in the columns of L
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293 CHOLMOD_NAME (row_subtree) (A1, A2, k, Parent, R, cm) ;
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294 for (octave_idx_type p = 0 ; p < Rp[1] ; p++)
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295 L.xridx (W[Ri[p]]++) = k ;
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296
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297 // add the diagonal entry
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298 L.xridx (W[k]++) = k ;
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299 }
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300
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301 // free workspace
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302 CHOLMOD_NAME (free_sparse) (&R, cm) ;
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303
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304
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305 // transpose L to get R, or leave as is
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306 if (nargin < 3)
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307 L = L.transpose ();
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308
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309 // fill numerical values of L with one's
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310 for (octave_idx_type p = 0 ; p < lnz ; p++)
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311 L.xdata(p) = true;
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312
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313 retval(4) = L;
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314 }
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315
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316 ColumnVector tmp (n);
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317 if (nargout > 3)
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318 {
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319 for (octave_idx_type i = 0; i < n; i++)
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320 tmp(i) = Post[i] + 1;
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321 retval(3) = tmp;
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322 }
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323
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324 if (nargout > 2)
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325 {
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326 for (octave_idx_type i = 0; i < n; i++)
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327 tmp(i) = Parent[i] + 1;
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328 retval(2) = tmp;
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329 }
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330
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331 if (nargout > 1)
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332 {
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333 // compute the elimination tree height
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334 octave_idx_type height = 0 ;
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335 for (int i = 0 ; i < n ; i++)
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336 height = (height > Level[i] ? height : Level[i]);
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337 height++ ;
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338 retval(1) = static_cast<double> (height);
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339 }
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340
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341 for (octave_idx_type i = 0; i < n; i++)
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342 tmp(i) = ColCount[i];
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343 retval(0) = tmp;
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344
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345 return retval;
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346
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347 #else
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348 err_disabled_feature ("symbfact", "CHOLMOD");
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349 #endif
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350 }