annotate libinterp/dldfcn/__voronoi__.cc @ 21942:aab79a1885cc

limit gnulib headers to liboctave/wrappers directory * libinterp/module.mk, liboctave/module.mk, src/module.mk, libgui/src/module.mk: Don't include libgnu directory in lists of include directories. * c-file-ptr-stream.cc, data.cc, dirfns.cc, file-io.cc, ft-text-renderer.cc, gcd.cc, gl2ps-print.cc, graphics.cc, mex.cc, oct-fstrm.cc, oct-procbuf.cc, oct-tex-lexer.in.ll, oct-tex-parser.in.yy, pr-output.cc, quadcc.cc, rand.cc, toplev.cc, utils.cc, __delaunayn__.cc, __init_fltk__.cc, __voronoi__.cc, convhulln.cc, ov-cell.cc, ov-float.cc, ov-scalar.cc, lex.ll, oct-parse.in.yy, Range.cc, idx-vector.cc, Faddeeva/Faddeeva.cc, lo-mappers.cc, lo-specfun.cc, randgamma.cc, randmtzig.cc, randpoisson.cc, dir-ops.cc, file-ops.cc, file-stat.cc, oct-env.cc, oct-syscalls.cc, oct-time.cc, oct-uname.cc, cmd-edit.cc, cmd-hist.cc, lo-utils.cc, oct-inttypes.cc, oct-shlib.cc, sparse-util.cc, mkoctfile.in.cc: Use std:: instead of gnulib:: namespace. * oct-conf-post.in.h: Don't define GNULIB_NAMESPACE.
author John W. Eaton <jwe@octave.org>
date Fri, 17 Jun 2016 13:45:04 -0400
parents 55f7de37b618
children 112b20240c87
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1 /*
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2
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3 Copyright (C) 2000-2015 Kai Habel
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4
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5 This file is part of Octave.
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6
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7 Octave is free software; you can redistribute it and/or modify it
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8 under the terms of the GNU General Public License as published by the
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9 Free Software Foundation; either version 3 of the License, or (at your
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10 option) any later version.
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11
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12 Octave is distributed in the hope that it will be useful, but WITHOUT
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13 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
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14 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
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15 for more details.
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16
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17 You should have received a copy of the GNU General Public License
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18 along with Octave; see the file COPYING. If not, see
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19 <http://www.gnu.org/licenses/>.
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20
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21 */
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23 /*
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24 20. Augiust 2000 - Kai Habel: first release
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25 */
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26
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27 /*
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28 2003-12-14 Rafael Laboissiere <rafael@laboissiere.net>
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29 Added optional second argument to pass options to the underlying
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30 qhull command
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31 */
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32
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33 #if defined (HAVE_CONFIG_H)
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34 # include "config.h"
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35 #endif
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36
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37 #include <cstdio>
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38
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39 #include <list>
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40
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41 #include "oct-locbuf.h"
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42 #include "lo-ieee.h"
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43
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44 #include "Cell.h"
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45 #include "defun-dld.h"
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46 #include "error.h"
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47 #include "errwarn.h"
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48 #include "ovl.h"
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49 #include "unwind-prot.h"
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50
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51 #if defined (HAVE_QHULL)
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52
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53 # include "oct-qhull.h"
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55 # if defined (NEED_QHULL_VERSION)
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56 char qh_version[] = "__voronoi__.oct 2007-07-24";
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57 # endif
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59 static void
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60 close_fcn (FILE *f)
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61 {
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62 std::fclose (f);
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63 }
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64
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65 static bool
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66 octave_qhull_dims_ok (octave_idx_type dim, octave_idx_type n, const char *who)
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67 {
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68 if (sizeof (octave_idx_type) > sizeof (int))
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69 {
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70 int maxval = std::numeric_limits<int>::max ();
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71
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72 if (dim > maxval || n > maxval)
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73 error ("%s: dimension too large for Qhull", who);
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74 }
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75
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76 return true;
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77 }
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78
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79 #endif
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80
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81 DEFUN_DLD (__voronoi__, args, ,
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82 "-*- texinfo -*-\n\
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83 @deftypefn {} {@var{C}, @var{F} =} __voronoi__ (@var{caller}, @var{pts})\n\
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84 @deftypefnx {} {@var{C}, @var{F} =} __voronoi__ (@var{caller}, @var{pts}, @var{options})\n\
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85 @deftypefnx {} {@var{C}, @var{F}, @var{Inf_Pts} =} __voronoi__ (@dots{})\n\
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86 Undocumented internal function.\n\
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87 @end deftypefn")
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88 {
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89 #if defined (HAVE_QHULL)
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90
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91 int nargin = args.length ();
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92
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93 if (nargin < 2 || nargin > 3)
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94 print_usage ();
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96 std::string caller = args(0).xstring_value ("__voronoi__: CALLER must be a string");
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97
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98 octave_value_list retval;
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99
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100 Matrix points = args(1).matrix_value ();
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101 const octave_idx_type dim = points.columns ();
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102 const octave_idx_type num_points = points.rows ();
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103
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104 if (! octave_qhull_dims_ok (dim, num_points, "__voronoi__"))
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105 return ovl (0.0);
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106
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107 points = points.transpose ();
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108
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109 std::string options;
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110
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111 if (dim <= 3)
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112 options = " Qbb";
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113 else
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114 options = " Qbb Qx";
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115
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116 if (nargin == 3)
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117 {
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118 octave_value opt_arg = args(2);
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119
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120 if (opt_arg.is_string ())
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121 options = " " + opt_arg.string_value ();
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122 else if (opt_arg.is_empty ())
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123 ; // Use default options.
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124 else if (opt_arg.is_cellstr ())
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125 {
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126 options = "";
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127
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128 Array<std::string> tmp = opt_arg.cellstr_value ();
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129
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130 for (octave_idx_type i = 0; i < tmp.numel (); i++)
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131 options += " " + tmp(i);
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132 }
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133 else
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134 error ("%s: OPTIONS must be a string, cell array of strings, or empty",
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135 caller.c_str ());
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136 }
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137
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138 boolT ismalloc = false;
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139
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140 octave::unwind_protect frame;
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141
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142 // Replace the outfile pointer with stdout for debugging information.
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143 #if defined (OCTAVE_HAVE_WINDOWS_FILESYSTEM) && ! defined (OCTAVE_HAVE_POSIX_FILESYSTEM)
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144 FILE *outfile = std::fopen ("NUL", "w");
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145 #else
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146 FILE *outfile = std::fopen ("/dev/null", "w");
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147 #endif
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148 FILE *errfile = stderr;
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149
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150 if (! outfile)
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151 error ("__voronoi__: unable to create temporary file for output");
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152
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153 frame.add_fcn (close_fcn, outfile);
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154
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155 // qh_new_qhull command and points arguments are not const...
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156
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157 std::string cmd = "qhull v" + options;
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158
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159 OCTAVE_LOCAL_BUFFER (char, cmd_str, cmd.length () + 1);
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160
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161 strcpy (cmd_str, cmd.c_str ());
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162
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163 int exitcode = qh_new_qhull (dim, num_points, points.fortran_vec (),
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164 ismalloc, cmd_str, outfile, errfile);
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165 if (exitcode)
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166 error ("%s: qhull failed", caller.c_str ());
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167
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168 // Calling findgood_all provides the number of Voronoi vertices
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169 // (sets qh num_good).
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170
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171 qh_findgood_all (qh facet_list);
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172
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173 octave_idx_type num_voronoi_regions
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174 = qh num_vertices - qh_setsize (qh del_vertices);
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175
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176 octave_idx_type num_voronoi_vertices = qh num_good;
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177
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178 // Find the voronoi centers for all facets.
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179
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180 qh_setvoronoi_all ();
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181
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182 facetT *facet;
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183 vertexT *vertex;
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184 octave_idx_type k;
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185
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186 // Find the number of Voronoi vertices for each Voronoi cell and
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187 // store them in NI so we can use them later to set the dimensions
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188 // of the RowVector objects used to collect them.
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189
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190 FORALLfacets
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191 {
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192 facet->seen = false;
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193 }
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194
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195 OCTAVE_LOCAL_BUFFER (octave_idx_type, ni, num_voronoi_regions);
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196 for (octave_idx_type i = 0; i < num_voronoi_regions; i++)
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197 ni[i] = 0;
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198
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199 k = 0;
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200
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201 FORALLvertices
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202 {
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203 if (qh hull_dim == 3)
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204 qh_order_vertexneighbors (vertex);
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205
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206 bool infinity_seen = false;
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207
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208 facetT *neighbor, **neighborp;
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209
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210 FOREACHneighbor_ (vertex)
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211 {
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212 if (neighbor->upperdelaunay)
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213 {
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214 if (! infinity_seen)
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215 {
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216 infinity_seen = true;
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217 ni[k]++;
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218 }
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219 }
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220 else
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221 {
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222 neighbor->seen = true;
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223 ni[k]++;
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224 }
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225 }
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226
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227 k++;
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228 }
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229
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230 // If Qhull finds fewer regions than points, we will pad the end
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231 // of the at_inf and C arrays so that they always contain at least
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232 // as many elements as the given points array.
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233
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234 // FIXME: is it possible (or does it make sense) for
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235 // num_voronoi_regions to ever be larger than num_points?
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236
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237 octave_idx_type nr = (num_points > num_voronoi_regions
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238 ? num_points : num_voronoi_regions);
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239
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240 boolMatrix at_inf (nr, 1, false);
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241
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242 // The list of Voronoi vertices. The first element is always
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243 // Inf.
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244 Matrix F (num_voronoi_vertices+1, dim);
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245
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246 for (octave_idx_type d = 0; d < dim; d++)
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247 F(0,d) = octave::numeric_limits<double>::Inf ();
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248
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249 // The cell array of vectors of indices into F that represent the
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250 // vertices of the Voronoi regions (cells).
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251
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252 Cell C (nr, 1);
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253
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254 // Now loop through the list of vertices again and store the
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255 // coordinates of the Voronoi vertices and the lists of indices
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256 // for the cells.
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257
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258 FORALLfacets
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259 {
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260 facet->seen = false;
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261 }
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262
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263 octave_idx_type i = 0;
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264 k = 0;
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265
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266 FORALLvertices
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267 {
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268 if (qh hull_dim == 3)
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269 qh_order_vertexneighbors (vertex);
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270
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271 bool infinity_seen = false;
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272
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273 octave_idx_type idx = qh_pointid (vertex->point);
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274
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275 octave_idx_type num_vertices = ni[k++];
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276
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277 // Qhull seems to sometimes produces regions with a single
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278 // vertex. Is that a bug? How can a region have just one
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279 // vertex? Let's skip it.
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280
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281 if (num_vertices == 1)
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282 continue;
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283
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284 RowVector facet_list (num_vertices);
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285
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286 octave_idx_type m = 0;
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287
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288 facetT *neighbor, **neighborp;
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289
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290 FOREACHneighbor_(vertex)
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291 {
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292 if (neighbor->upperdelaunay)
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293 {
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294 if (! infinity_seen)
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295 {
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296 infinity_seen = true;
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297 facet_list(m++) = 1;
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298 at_inf(idx) = true;
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299 }
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300 }
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301 else
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302 {
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303 if (! neighbor->seen)
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304 {
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305 i++;
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306 for (octave_idx_type d = 0; d < dim; d++)
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307 F(i,d) = neighbor->center[d];
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308
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309 neighbor->seen = true;
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310 neighbor->visitid = i;
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311 }
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312
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313 facet_list(m++) = neighbor->visitid + 1;
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314 }
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315 }
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316
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317 C(idx) = facet_list;
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318 }
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319
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320 retval = ovl (F, C, at_inf);
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321
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322 // Free memory from Qhull
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323 qh_freeqhull (! qh_ALL);
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324
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325 int curlong, totlong;
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326 qh_memfreeshort (&curlong, &totlong);
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327
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328 if (curlong || totlong)
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329 warning ("%s: qhull did not free %d bytes of long memory (%d pieces)",
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330 caller.c_str (), totlong, curlong);
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331
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332 return retval;
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333
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334 #else
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335
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336 octave_unused_parameter (args);
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337
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338 std::string caller
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339 = (args.length () > 0
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340 ? args(0).xstring_value ("__voronoi__: CALLER must be a string")
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341 : std::string ("__voronoi__"));
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342
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343 err_disabled_feature (caller, "Qhull");
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344
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345 #endif
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346 }
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347
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348 /*
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349 ## No test needed for internal helper function.
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350 %!assert (1)
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351 */