view libinterp/corefcn/svd.cc @ 21966:112b20240c87

move docstrings in C++ files out of C strings and into comments * __contourc__.cc, __dispatch__.cc, __dsearchn__.cc, __ichol__.cc, __ilu__.cc, __lin_interpn__.cc, __luinc__.cc, __magick_read__.cc, __pchip_deriv__.cc, __qp__.cc, balance.cc, besselj.cc, betainc.cc, bitfcns.cc, bsxfun.cc, cellfun.cc, colloc.cc, conv2.cc, daspk.cc, dasrt.cc, dassl.cc, data.cc, debug.cc, defaults.cc, det.cc, dirfns.cc, dlmread.cc, dot.cc, eig.cc, ellipj.cc, error.cc, fft.cc, fft2.cc, fftn.cc, file-io.cc, filter.cc, find.cc, gammainc.cc, gcd.cc, getgrent.cc, getpwent.cc, getrusage.cc, givens.cc, graphics.cc, hash.cc, help.cc, hess.cc, hex2num.cc, input.cc, inv.cc, kron.cc, load-path.cc, load-save.cc, lookup.cc, ls-oct-text.cc, lsode.cc, lu.cc, mappers.cc, matrix_type.cc, max.cc, mgorth.cc, nproc.cc, oct-hist.cc, octave-link.cc, ordschur.cc, pager.cc, pinv.cc, pr-output.cc, profiler.cc, psi.cc, pt-jit.cc, quad.cc, quadcc.cc, qz.cc, rand.cc, rcond.cc, regexp.cc, schur.cc, sighandlers.cc, sparse.cc, spparms.cc, sqrtm.cc, str2double.cc, strfind.cc, strfns.cc, sub2ind.cc, svd.cc, sylvester.cc, symtab.cc, syscalls.cc, sysdep.cc, time.cc, toplev.cc, tril.cc, tsearch.cc, typecast.cc, urlwrite.cc, utils.cc, variables.cc, __delaunayn__.cc, __eigs__.cc, __fltk_uigetfile__.cc, __glpk__.cc, __init_fltk__.cc, __init_gnuplot__.cc, __osmesa_print__.cc, __voronoi__.cc, amd.cc, audiodevinfo.cc, audioread.cc, ccolamd.cc, chol.cc, colamd.cc, convhulln.cc, dmperm.cc, fftw.cc, qr.cc, symbfact.cc, symrcm.cc, ov-base.cc, ov-bool-mat.cc, ov-cell.cc, ov-class.cc, ov-classdef.cc, ov-fcn-handle.cc, ov-fcn-inline.cc, ov-flt-re-mat.cc, ov-int16.cc, ov-int32.cc, ov-int64.cc, ov-int8.cc, ov-java.cc, ov-null-mat.cc, ov-oncleanup.cc, ov-range.cc, ov-re-mat.cc, ov-struct.cc, ov-typeinfo.cc, ov-uint16.cc, ov-uint32.cc, ov-uint64.cc, ov-uint8.cc, ov-usr-fcn.cc, ov.cc, octave.cc, pt-arg-list.cc, pt-binop.cc, pt-eval.cc, pt-mat.cc, lex.ll, oct-parse.in.yy: Docstrings are now comments instead of C strings. * build-aux/mk-opts.pl: Emit docstrings as comments instead of C strings. * DASPK-opts.in, LSODE-opts.in: Don't quote " in docstring fragments. * builtins.h: Include builtin-defun-decls.h unconditionally. * defun.h (DEFUN, DEFUNX, DEFCONSTFUN): Simply emit declaration. (DEFALIAS): Always expand to nothing. * defun-dld.h: No special macro expansions for MAKE_BUILTINS. (DEFUN_DLD): Use FORWARD_DECLARE_FUN. (DEFUNX_DLD): Use FORWARD_DECLARE_FUNX. * defun-int.h: No special macro expansions for MAKE_BUILTINS. (FORWARD_DECLARE_FUN, FORWARD_DECLARE_FUNX): New macros. (DEFINE_FUN_INSTALLER_FUN): If compiling an Octave source file, pass "external-doc" to DEFINE_FUNX_INSTALLER_FUN. (DEFUN_INTERNAL, DEFCONSTFUN_INTERNAL, DEFUNX_INTERNAL, DEFALIAS_INTERNAL): Delete. * common.mk (move_if_change_rule): New macro. (simple_move_if_change_rule): Define using move_if_change_rule. * find-defun-files.sh (DEFUN_PATTERN): Update. Don't transform file name extension to ".df". * libinterp/mk-pkg-add, gendoc.pl: Operate directly on source files. * mkbuiltins: New argument, SRCDIR. Operate directly on source files. * mkdefs: Delete. * libinterp/module.mk (BUILT_SOURCES): Update list to contain only files included in other source files. (GENERATED_MAKE_BUILTINS_INCS, DEF_FILES): Delete. (LIBINTERP_BUILT_DISTFILES): Include $(OPT_HANDLERS) here. (LIBINTERP_BUILT_NODISTFILES): Not here. Remove $(ALL_DEF_FILES from the list. (libinterp_EXTRA_DIST): Remove mkdefs from the list. (FOUND_DEFUN_FILES): Rename from SRC_DEF_FILES. (DLDFCN_DEFUN_FILES): Rename from DLDFCN_DEF_FILES. (SRC_DEFUN_FILES): Rename from SRC_DEF_FILES. (ALL_DEFUN_FILES): Rename from ALL_DEF_FILES. (%.df: %.cc): Delete pattern rule. (libinterp/build-env-features.cc, libinterp/builtins.cc, libinterp/dldfcn/PKG_ADD): Use mv instead of move-if-change. (libinterp/builtins.cc, libinterp/builtin-defun-decls.h): Update mkbuiltins command. ($(srcdir)/libinterp/DOCSTRINGS): Update gendoc.pl command. * liboctave/module.mk (BUILT_SOURCES): Don't include liboctave-build-info.cc in the list.
author John W. Eaton <jwe@octave.org>
date Tue, 21 Jun 2016 16:07:51 -0400
parents aba2e6293dd8
children 469c817eb256
line wrap: on
line source

/*

Copyright (C) 1996-2015 John W. Eaton

This file is part of Octave.

Octave is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 3 of the License, or (at your
option) any later version.

Octave is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
for more details.

You should have received a copy of the GNU General Public License
along with Octave; see the file COPYING.  If not, see
<http://www.gnu.org/licenses/>.

*/

#if defined (HAVE_CONFIG_H)
#  include "config.h"
#endif

#include "svd.h"

#include "defun.h"
#include "error.h"
#include "errwarn.h"
#include "ovl.h"
#include "pr-output.h"
#include "utils.h"
#include "variables.h"

static std::string Vsvd_driver = "gesvd";

template <typename T>
static typename svd<T>::type
svd_type (int nargin, int nargout)
{
  return ((nargout == 0 || nargout == 1)
          ? svd<T>::sigma_only
          : (nargin == 2) ? svd<T>::economy : svd<T>::std);
}

template <typename T>
static typename svd<T>::driver
svd_driver (void)
{
  return Vsvd_driver == "gesvd" ? svd<T>::GESVD : svd<T>::GESDD;
}

DEFUN (svd, args, nargout,
       doc: /* -*- texinfo -*-
@deftypefn  {} {@var{s} =} svd (@var{A})
@deftypefnx {} {[@var{U}, @var{S}, @var{V}] =} svd (@var{A})
@deftypefnx {} {[@var{U}, @var{S}, @var{V}] =} svd (@var{A}, @var{econ})
@cindex singular value decomposition
Compute the singular value decomposition of @var{A}
@tex
$$
 A = U S V^{\dagger}
$$
@end tex
@ifnottex

@example
A = U*S*V'
@end example

@end ifnottex

The function @code{svd} normally returns only the vector of singular values.
When called with three return values, it computes
@tex
$U$, $S$, and $V$.
@end tex
@ifnottex
@var{U}, @var{S}, and @var{V}.
@end ifnottex
For example,

@example
svd (hilb (3))
@end example

@noindent
returns

@example
@group
ans =

  1.4083189
  0.1223271
  0.0026873
@end group
@end example

@noindent
and

@example
[u, s, v] = svd (hilb (3))
@end example

@noindent
returns

@example
@group
u =

  -0.82704   0.54745   0.12766
  -0.45986  -0.52829  -0.71375
  -0.32330  -0.64901   0.68867

s =

  1.40832  0.00000  0.00000
  0.00000  0.12233  0.00000
  0.00000  0.00000  0.00269

v =

  -0.82704   0.54745   0.12766
  -0.45986  -0.52829  -0.71375
  -0.32330  -0.64901   0.68867
@end group
@end example

If given a second argument, @code{svd} returns an economy-sized
decomposition, eliminating the unnecessary rows or columns of @var{U} or
@var{V}.
@seealso{svd_driver, svds, eig, lu, chol, hess, qr, qz}
@end deftypefn */)
{
  int nargin = args.length ();

  if (nargin < 1 || nargin > 2 || nargout == 2 || nargout > 3)
    print_usage ();

  octave_value arg = args(0);

  if (arg.ndims () != 2)
    error ("svd: A must be a 2-D matrix");

  octave_value_list retval;

  bool isfloat = arg.is_single_type ();

  if (isfloat)
    {
      if (arg.is_real_type ())
        {
          FloatMatrix tmp = arg.float_matrix_value ();

          if (tmp.any_element_is_inf_or_nan ())
            error ("svd: cannot take SVD of matrix containing Inf or NaN values");

          svd<FloatMatrix> result (tmp,
                                   svd_type<FloatMatrix> (nargin, nargout),
                                   svd_driver<FloatMatrix> ());

          FloatDiagMatrix sigma = result.singular_values ();

          if (nargout == 0 || nargout == 1)
            retval(0) = sigma.extract_diag ();
          else
            retval = ovl (result.left_singular_matrix (),
                          sigma,
                          result.right_singular_matrix ());
        }
      else if (arg.is_complex_type ())
        {
          FloatComplexMatrix ctmp = arg.float_complex_matrix_value ();

          if (ctmp.any_element_is_inf_or_nan ())
            error ("svd: cannot take SVD of matrix containing Inf or NaN values");

          svd<FloatComplexMatrix> result (ctmp,
                                          svd_type<FloatComplexMatrix> (nargin, nargout),
                                          svd_driver<FloatComplexMatrix> ());

          FloatDiagMatrix sigma = result.singular_values ();

          if (nargout == 0 || nargout == 1)
            retval(0) = sigma.extract_diag ();
          else
            retval = ovl (result.left_singular_matrix (),
                          sigma,
                          result.right_singular_matrix ());
        }
    }
  else
    {
      if (arg.is_real_type ())
        {
          Matrix tmp = arg.matrix_value ();

          if (tmp.any_element_is_inf_or_nan ())
            error ("svd: cannot take SVD of matrix containing Inf or NaN values");

          svd<Matrix> result (tmp,
                              svd_type<Matrix> (nargin, nargout),
                              svd_driver<Matrix> ());

          DiagMatrix sigma = result.singular_values ();

          if (nargout == 0 || nargout == 1)
            retval(0) = sigma.extract_diag ();
          else
            retval = ovl (result.left_singular_matrix (),
                          sigma,
                          result.right_singular_matrix ());
        }
      else if (arg.is_complex_type ())
        {
          ComplexMatrix ctmp = arg.complex_matrix_value ();

          if (ctmp.any_element_is_inf_or_nan ())
            error ("svd: cannot take SVD of matrix containing Inf or NaN values");

          svd<ComplexMatrix> result (ctmp,
                                     svd_type<ComplexMatrix> (nargin, nargout),
                                     svd_driver<ComplexMatrix> ());

          DiagMatrix sigma = result.singular_values ();

          if (nargout == 0 || nargout == 1)
            retval(0) = sigma.extract_diag ();
          else
            retval = ovl (result.left_singular_matrix (),
                          sigma,
                          result.right_singular_matrix ());
        }
      else
        err_wrong_type_arg ("svd", arg);
    }

  return retval;
}

/*
%!assert (svd ([1, 2; 2, 1]), [3; 1], sqrt (eps))

%!test
%! [u, s, v] = svd ([1, 2; 2, 1]);
%! x = 1 / sqrt (2);
%! assert (u, [-x, -x; -x, x], sqrt (eps));
%! assert (s, [3, 0; 0, 1], sqrt (eps));
%! assert (v, [-x, x; -x, -x], sqrt (eps));

%!test
%! a = [1, 2, 3; 4, 5, 6];
%! [u, s, v] = svd (a);
%! assert (u * s * v', a, sqrt (eps));

%!test
%! a = [1, 2; 3, 4; 5, 6];
%! [u, s, v] = svd (a);
%! assert (u * s * v', a, sqrt (eps));

%!test
%! a = [1, 2, 3; 4, 5, 6];
%! [u, s, v] = svd (a, 1);
%! assert (u * s * v', a, sqrt (eps));

%!test
%! a = [1, 2; 3, 4; 5, 6];
%! [u, s, v] = svd (a, 1);
%! assert (u * s * v', a, sqrt (eps));

%!assert (svd (single ([1, 2; 2, 1])), single ([3; 1]), sqrt (eps ("single")))

%!test
%! [u, s, v] = svd (single ([1, 2; 2, 1]));
%! x = single (1 / sqrt (2));
%! assert (u, [-x, -x; -x, x], sqrt (eps ("single")));
%! assert (s, single ([3, 0; 0, 1]), sqrt (eps ("single")));
%! assert (v, [-x, x; -x, -x], sqrt (eps ("single")));

%!test
%! a = single ([1, 2, 3; 4, 5, 6]);
%! [u, s, v] = svd (a);
%! assert (u * s * v', a, sqrt (eps ("single")));

%!test
%! a = single ([1, 2; 3, 4; 5, 6]);
%! [u, s, v] = svd (a);
%! assert (u * s * v', a, sqrt (eps ("single")));

%!test
%! a = single ([1, 2, 3; 4, 5, 6]);
%! [u, s, v] = svd (a, 1);
%! assert (u * s * v', a, sqrt (eps ("single")));

%!test
%! a = single ([1, 2; 3, 4; 5, 6]);
%! [u, s, v] = svd (a, 1);
%! assert (u * s * v', a, sqrt (eps ("single")));

%!test
%! a = zeros (0, 5);
%! [u, s, v] = svd (a);
%! assert (size (u), [0, 0]);
%! assert (size (s), [0, 5]);
%! assert (size (v), [5, 5]);

%!test
%! a = zeros (5, 0);
%! [u, s, v] = svd (a, 1);
%! assert (size (u), [5, 0]);
%! assert (size (s), [0, 0]);
%! assert (size (v), [0, 0]);

%!error svd ()
%!error svd ([1, 2; 4, 5], 2, 3)
%!error [u, v] = svd ([1, 2; 3, 4])
*/

DEFUN (svd_driver, args, nargout,
       doc: /* -*- texinfo -*-
@deftypefn  {} {@var{val} =} svd_driver ()
@deftypefnx {} {@var{old_val} =} svd_driver (@var{new_val})
@deftypefnx {} {} svd_driver (@var{new_val}, "local")
Query or set the underlying @sc{lapack} driver used by @code{svd}.

Currently recognized values are @qcode{"gesvd"} and @qcode{"gesdd"}.
The default is @qcode{"gesvd"}.

When called from inside a function with the @qcode{"local"} option, the
variable is changed locally for the function and any subroutines it calls.
The original variable value is restored when exiting the function.
@seealso{svd}
@end deftypefn */)
{
  static const char *driver_names[] = { "gesvd", "gesdd", 0 };

  return SET_INTERNAL_VARIABLE_CHOICES (svd_driver, driver_names);
}

/*
%!test
%! A = [1+1i, 1-1i, 0; 0, 2, 0; 1i, 1i, 1+2i];
%! old_driver = svd_driver ("gesvd");
%! [U1, S1, V1] = svd (A);
%! svd_driver ("gesdd");
%! [U2, S2, V2] = svd (A);
%! assert (U1, U2, 5*eps);
%! assert (S1, S2, 5*eps);
%! assert (V1, V2, 5*eps);
%! svd_driver (old_driver);
*/