annotate src/MeshFunction.cc @ 263:a61fc34334ca

Use meshfunction to mark subdomains
author Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
date Thu, 07 Aug 2014 19:21:36 +0200
parents 598c5e9e0a9e
children 41b76530fe5e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
1 /*
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
2 Copyright (C) 2014 Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
3
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
4 This program is free software; you can redistribute it and/or modify it under
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
5 the terms of the GNU General Public License as published by the Free Software
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
6 Foundation; either version 3 of the License, or (at your option) any later
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
7 version.
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
8
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
9 This program is distributed in the hope that it will be useful, but WITHOUT
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
10 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
11 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
12 details.
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
13
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
14 You should have received a copy of the GNU General Public License along with
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
15 this program; if not, see <http://www.gnu.org/licenses/>.
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
16 */
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
17
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
18 #include <dolfin.h>
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
19 #include "mesh.h"
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
20 #include "meshfunction.h"
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
21 #include "dolfin_compat.h"
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
22
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
23 DEFUN_DLD (MeshFunction, args, nargout, "-*- texinfo -*-\n\
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
24 @deftypefn {Function File} {[@var{meshfunc}]} = \
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
25 MeshFunction (@var{Mesh}, @var{filename})\n\
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
26 @deftypefnx {Function File} {[@var{meshfunc}]} = \
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
27 MeshFunction (@var{type}, @var{Mesh}, @var{filename})\n\
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
28 Initialize a meshfunction with the values contained in a XDMF file.\n\
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
29 The output @var{meshfunc} is an object which contains a representation of the \
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
30 meshfunction in @var{filename} which can be used to mark subdomains or \
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
31 facets where Dirichlet boundary conditions are to be applied.\n\
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
32 Optionally, you can set a label identifying the @var{type} of markers, \
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
33 in order to use @var{meshfunc} to mark subdomains in BilinearForm or \
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
34 LinearForm. Three labels are recognized: ""dx"" for cell markers, \
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
35 ""ds"" for exterior facets and ""dS"" for interior facets.\n\
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
36 @seealso{DirichletBC, save, BilinearForm, LinearForm}\n\
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
37 @end deftypefn")
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
38 {
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
39
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
40 int nargin = args.length ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
41 octave_value retval;
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
42
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
43 if (nargin < 2 || nargin > 3 || nargout > 1)
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
44 print_usage ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
45 else
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
46 {
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
47 if (! mesh_type_loaded)
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
48 {
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
49 mesh::register_type ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
50 mesh_type_loaded = true;
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
51 mlock ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
52 }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
53
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
54 if (! meshfunction_type_loaded)
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
55 {
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
56 meshfunction::register_type ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
57 meshfunction_type_loaded = true;
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
58 mlock ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
59 }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
60
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
61 octave_idx_type offset = 0;
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
62 std::string label;
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
63
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
64 if (args(0).is_string ())
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
65 {
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
66 label = args(0).string_value ();
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
67 offset = 1;
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
68 }
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
69
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
70 if (args(0 + offset).type_id () == mesh::static_type_id ()
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
71 && args(1 + offset).is_string ())
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
72 {
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
73 std::string filename = args(1 + offset).string_value ();
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
74 mesh const & msh_arg =
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
75 static_cast<mesh const &> (args(0 + offset).get_rep ());
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
76
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
77 if (!error_state)
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
78 {
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
79 SHARED_PTR <dolfin::Mesh const> const &
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
80 pmsh = msh_arg.get_pmsh ();
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
81 filename += ".xdmf";
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
82
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
83 try
263
a61fc34334ca Use meshfunction to mark subdomains
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents: 259
diff changeset
84 { retval = new meshfunction (label, pmsh, filename); }
259
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
85 catch (std::runtime_error &)
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
86 { error ("error reading file"); }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
87 }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
88 }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
89 else
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
90 error ("invalid input arguments");
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
91 }
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
92
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
93 return retval;
598c5e9e0a9e Add utilities for meshfunction
Eugenio Gianniti <eugenio.gianniti@mail.polimi.it>
parents:
diff changeset
94 }