Mercurial > octave
annotate libinterp/octave-value/ov-str-mat.cc @ 21066:258c787cd9ce
maint: Use "FIXME:" consistently in code base.
* file-editor-tab.h, mxarray.in.h, pr-output.cc, symtab.h, ov-bool-sparse.h,
ov-bool.h, ov-float.h, ov-scalar.h, ov-str-mat.cc, oct-parse.in.yy, f77-fcn.h,
lo-specfun.cc, randmtzig.c, randpoisson.c, lo-ieee.h, oct-rl-edit.c,
sparse-util.h: Use "FIXME:" consistently in code base.
author | Rik <rik@octave.org> |
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date | Thu, 14 Jan 2016 07:02:41 -0800 |
parents | ebc439187d29 |
children | e39e05d90788 |
rev | line source |
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2376 | 1 /* |
2 | |
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3 Copyright (C) 1996-2015 John W. Eaton |
11523 | 4 Copyright (C) 2009-2010 VZLU Prague |
2376 | 5 |
6 This file is part of Octave. | |
7 | |
8 Octave is free software; you can redistribute it and/or modify it | |
9 under the terms of the GNU General Public License as published by the | |
7016 | 10 Free Software Foundation; either version 3 of the License, or (at your |
11 option) any later version. | |
2376 | 12 |
13 Octave is distributed in the hope that it will be useful, but WITHOUT | |
14 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or | |
15 FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License | |
16 for more details. | |
17 | |
18 You should have received a copy of the GNU General Public License | |
7016 | 19 along with Octave; see the file COPYING. If not, see |
20 <http://www.gnu.org/licenses/>. | |
2376 | 21 |
22 */ | |
23 | |
24 #ifdef HAVE_CONFIG_H | |
25 #include <config.h> | |
26 #endif | |
27 | |
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28 #include <cctype> |
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29 |
3503 | 30 #include <iostream> |
4726 | 31 #include <vector> |
2901 | 32 |
4944 | 33 #include "data-conv.h" |
2376 | 34 #include "lo-ieee.h" |
4944 | 35 #include "mach-info.h" |
2376 | 36 #include "mx-base.h" |
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37 #include "oct-locbuf.h" |
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39 #include "byte-swap.h" |
5758 | 40 #include "defun.h" |
41 #include "gripes.h" | |
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42 #include "ls-ascii-helper.h" |
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43 #include "ls-hdf5.h" |
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44 #include "ls-oct-text.h" |
5758 | 45 #include "ls-utils.h" |
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46 #include "ovl.h" |
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47 #include "oct-hdf5.h" |
4944 | 48 #include "oct-stream.h" |
2376 | 49 #include "ops.h" |
5033 | 50 #include "ov-scalar.h" |
2376 | 51 #include "ov-re-mat.h" |
52 #include "ov-str-mat.h" | |
53 #include "pr-output.h" | |
3836 | 54 #include "pt-mat.h" |
5758 | 55 #include "utils.h" |
4687 | 56 |
2376 | 57 |
4612 | 58 DEFINE_OV_TYPEID_FUNCTIONS_AND_DATA (octave_char_matrix_str, "string", "char"); |
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59 DEFINE_OV_TYPEID_FUNCTIONS_AND_DATA (octave_char_matrix_sq_str, "sq_string", |
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60 "char"); |
2376 | 61 |
5759 | 62 static octave_base_value * |
63 default_numeric_conversion_function (const octave_base_value& a) | |
2376 | 64 { |
5759 | 65 octave_base_value *retval = 0; |
5033 | 66 |
2376 | 67 CAST_CONV_ARG (const octave_char_matrix_str&); |
68 | |
4668 | 69 NDArray nda = v.array_value (true); |
3203 | 70 |
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71 if (nda.numel () == 1) |
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72 retval = new octave_scalar (nda(0)); |
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73 else |
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74 retval = new octave_matrix (nda); |
5033 | 75 |
76 return retval; | |
2376 | 77 } |
78 | |
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79 octave_base_value::type_conv_info |
2376 | 80 octave_char_matrix_str::numeric_conversion_function (void) const |
81 { | |
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82 return octave_base_value::type_conv_info (default_numeric_conversion_function, |
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83 octave_matrix::static_type_id ()); |
2376 | 84 } |
85 | |
86 octave_value | |
5400 | 87 octave_char_matrix_str::do_index_op_internal (const octave_value_list& idx, |
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88 bool resize_ok, char type) |
2407 | 89 { |
90 octave_value retval; | |
91 | |
5275 | 92 octave_idx_type len = idx.length (); |
2407 | 93 |
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94 // If we catch an indexing error in index_vector, we flag an error in |
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95 // index k. Ensure it is the right value befor each idx_vector call. |
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96 // Same variable as used in the for loop in the default case. |
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97 |
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98 octave_idx_type k = 0; |
2407 | 99 |
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100 try |
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101 { |
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102 switch (len) |
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103 { |
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104 case 0: |
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105 retval = octave_value (matrix, type); |
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106 break; |
2407 | 107 |
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108 case 1: |
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109 { |
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110 idx_vector i = idx (0).index_vector (); |
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111 |
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112 retval = octave_value (charNDArray (matrix.index (i, resize_ok)), |
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113 type); |
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114 } |
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115 break; |
2407 | 116 |
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117 case 2: |
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118 { |
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119 idx_vector i = idx (0).index_vector (); |
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120 k = 1; |
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121 idx_vector j = idx (1).index_vector (); |
5539 | 122 |
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123 retval = octave_value (charNDArray (matrix.index (i, j, resize_ok)), |
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124 type); |
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125 } |
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126 break; |
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127 |
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128 default: |
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129 { |
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130 Array<idx_vector> idx_vec (dim_vector (len, 1)); |
5435 | 131 |
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132 for (k = 0; k < len; k++) |
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133 idx_vec(k) = idx(k).index_vector (); |
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135 retval = |
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136 octave_value (charNDArray (matrix.index (idx_vec, resize_ok)), |
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137 type); |
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138 } |
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139 break; |
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140 } |
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141 } |
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142 catch (index_exception& e) |
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143 { |
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144 // Rethrow to allow more info to be reported later. |
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145 e.set_pos_if_unset (len, k+1); |
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146 throw; |
2407 | 147 } |
148 | |
149 return retval; | |
150 } | |
151 | |
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152 octave_value |
5731 | 153 octave_char_matrix_str::resize (const dim_vector& dv, bool fill) const |
154 { | |
155 charNDArray retval (matrix); | |
156 if (fill) | |
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157 retval.resize (dv, 0); |
5731 | 158 else |
159 retval.resize (dv); | |
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160 return octave_value (retval, is_sq_string () ? '\'' : '"'); |
5731 | 161 } |
162 | |
4668 | 163 #define CHAR_MATRIX_CONV(T, INIT, TNAME, FCN) \ |
164 T retval INIT; \ | |
165 \ | |
166 if (! force_string_conv) \ | |
167 gripe_invalid_conversion ("string", TNAME); \ | |
168 else \ | |
169 { \ | |
5878 | 170 warning_with_id ("Octave:str-to-num", \ |
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171 "implicit conversion from %s to %s", \ |
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172 "string", TNAME); \ |
4668 | 173 \ |
174 retval = octave_char_matrix::FCN (); \ | |
175 } \ | |
176 \ | |
177 return retval | |
178 | |
4643 | 179 double |
180 octave_char_matrix_str::double_value (bool force_string_conv) const | |
181 { | |
4668 | 182 CHAR_MATRIX_CONV (double, = 0, "real scalar", double_value); |
183 } | |
4643 | 184 |
4668 | 185 Complex |
186 octave_char_matrix_str::complex_value (bool force_string_conv) const | |
187 { | |
188 CHAR_MATRIX_CONV (Complex, = 0, "complex scalar", complex_value); | |
4643 | 189 } |
190 | |
2376 | 191 Matrix |
192 octave_char_matrix_str::matrix_value (bool force_string_conv) const | |
193 { | |
4668 | 194 CHAR_MATRIX_CONV (Matrix, , "real matrix", matrix_value); |
195 } | |
196 | |
197 ComplexMatrix | |
198 octave_char_matrix_str::complex_matrix_value (bool force_string_conv) const | |
199 { | |
200 CHAR_MATRIX_CONV (ComplexMatrix, , "complex matrix", complex_matrix_value); | |
201 } | |
2376 | 202 |
4668 | 203 NDArray |
204 octave_char_matrix_str::array_value (bool force_string_conv) const | |
205 { | |
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206 CHAR_MATRIX_CONV (NDArray, , "real N-D array", array_value); |
4668 | 207 } |
2376 | 208 |
4668 | 209 ComplexNDArray |
210 octave_char_matrix_str::complex_array_value (bool force_string_conv) const | |
211 { | |
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212 CHAR_MATRIX_CONV (ComplexNDArray, , "complex N-D array", |
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213 complex_array_value); |
2376 | 214 } |
215 | |
2493 | 216 string_vector |
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217 octave_char_matrix_str::string_vector_value (bool) const |
2376 | 218 { |
4513 | 219 string_vector retval; |
220 | |
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221 if (matrix.ndims () != 2) |
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222 error ("invalid conversion of charNDArray to string_vector"); |
4513 | 223 |
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224 charMatrix chm (matrix); |
2493 | 225 |
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226 octave_idx_type n = chm.rows (); |
2493 | 227 |
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228 retval.resize (n); |
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229 |
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230 for (octave_idx_type i = 0; i < n; i++) |
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231 retval[i] = chm.row_as_string (i); |
2493 | 232 |
233 return retval; | |
2376 | 234 } |
235 | |
3536 | 236 std::string |
4457 | 237 octave_char_matrix_str::string_value (bool) const |
2376 | 238 { |
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239 if (matrix.ndims () != 2) |
4513 | 240 error ("invalid conversion of charNDArray to string"); |
241 | |
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242 charMatrix chm (matrix); |
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243 |
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244 // FIXME: Is this correct? |
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245 return chm.row_as_string (0); |
2376 | 246 } |
247 | |
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248 Array<std::string> |
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249 octave_char_matrix_str::cellstr_value (void) const |
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250 { |
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251 Array<std::string> retval; |
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252 |
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253 if (matrix.ndims () != 2) |
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254 error ("cellstr: cannot convert multidimensional arrays"); |
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255 |
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256 const charMatrix chm (matrix); |
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257 octave_idx_type nr = chm.rows (); |
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258 retval.clear (nr, 1); |
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259 for (octave_idx_type i = 0; i < nr; i++) |
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260 retval.xelem (i) = chm.row_as_string (i); |
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261 |
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262 return retval; |
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263 } |
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264 |
2376 | 265 void |
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266 octave_char_matrix_str::print_raw (std::ostream& os, |
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267 bool pr_as_read_syntax) const |
2376 | 268 { |
3219 | 269 octave_print_internal (os, matrix, pr_as_read_syntax, |
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270 current_print_indent_level (), true); |
2376 | 271 } |
272 | |
17870 | 273 void |
274 octave_char_matrix_str::short_disp (std::ostream& os) const | |
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275 { |
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276 if (matrix.ndims () == 2 && numel () > 0) |
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277 { |
17870 | 278 std::string tmp = string_value (); |
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279 |
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280 // FIXME: should this be configurable? |
17870 | 281 size_t max_len = 100; |
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282 |
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283 os << (tmp.length () > max_len ? tmp.substr (0, 100) : tmp); |
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284 } |
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285 } |
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286 |
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287 bool |
6974 | 288 octave_char_matrix_str::save_ascii (std::ostream& os) |
4687 | 289 { |
4805 | 290 dim_vector d = dims (); |
291 if (d.length () > 2) | |
292 { | |
293 charNDArray tmp = char_array_value (); | |
294 os << "# ndims: " << d.length () << "\n"; | |
295 for (int i=0; i < d.length (); i++) | |
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296 os << " " << d(i); |
4805 | 297 os << "\n"; |
5760 | 298 os.write (tmp.fortran_vec (), d.numel ()); |
4805 | 299 os << "\n"; |
300 } | |
301 else | |
4687 | 302 { |
4805 | 303 // Keep this case, rather than use generic code above for |
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304 // backward compatibility. Makes load_ascii much more complex!! |
4805 | 305 charMatrix chm = char_matrix_value (); |
5275 | 306 octave_idx_type elements = chm.rows (); |
4805 | 307 os << "# elements: " << elements << "\n"; |
5275 | 308 for (octave_idx_type i = 0; i < elements; i++) |
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309 { |
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310 unsigned len = chm.cols (); |
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311 os << "# length: " << len << "\n"; |
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312 std::string tstr = chm.row_as_string (i); |
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313 const char *tmp = tstr.data (); |
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314 if (tstr.length () > len) |
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315 panic_impossible (); |
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316 os.write (tmp, len); |
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317 os << "\n"; |
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318 } |
4687 | 319 } |
320 | |
321 return true; | |
322 } | |
323 | |
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324 bool |
4687 | 325 octave_char_matrix_str::load_ascii (std::istream& is) |
326 { | |
327 bool success = true; | |
5099 | 328 |
329 string_vector keywords(3); | |
330 | |
331 keywords[0] = "ndims"; | |
332 keywords[1] = "elements"; | |
333 keywords[2] = "length"; | |
334 | |
335 std::string kw; | |
336 int val = 0; | |
4687 | 337 |
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338 if (! extract_keyword (is, keywords, kw, val, true)) |
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339 error ("load: failed to extract number of rows and columns"); |
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340 |
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341 if (kw == "ndims") |
4687 | 342 { |
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343 int mdims = val; |
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344 |
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345 if (mdims < 0) |
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346 error ("load: failed to extract matrix size"); |
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347 |
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348 dim_vector dv; |
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349 dv.resize (mdims); |
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350 |
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351 for (int i = 0; i < mdims; i++) |
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352 is >> dv(i); |
5099 | 353 |
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354 if (! is) |
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355 error ("load: failed to read dimensions"); |
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356 |
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357 charNDArray tmp(dv); |
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358 |
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359 if (tmp.is_empty ()) |
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360 matrix = tmp; |
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361 else |
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362 { |
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363 char *ftmp = tmp.fortran_vec (); |
4805 | 364 |
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365 skip_preceeding_newline (is); |
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366 |
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367 if (! is.read (ftmp, dv.numel ()) || ! is) |
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368 error ("load: failed to load string constant"); |
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369 |
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370 matrix = tmp; |
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371 } |
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372 } |
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373 else if (kw == "elements") |
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374 { |
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375 int elements = val; |
4687 | 376 |
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377 if (elements < 0) |
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378 error ("load: failed to extract number of string elements"); |
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379 |
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380 // FIXME: need to be able to get max length before doing anything. |
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381 |
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382 charMatrix chm (elements, 0); |
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383 int max_len = 0; |
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384 for (int i = 0; i < elements; i++) |
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385 { |
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386 int len; |
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387 if (! extract_keyword (is, "length", len) || len < 0) |
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388 error ("load: failed to extract string length for element %d", |
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389 i+1); |
6717 | 390 |
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391 // Use this instead of a C-style character |
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392 // buffer so that we can properly handle |
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393 // embedded NUL characters. |
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394 charMatrix tmp (1, len); |
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395 char *ptmp = tmp.fortran_vec (); |
4805 | 396 |
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397 if (len > 0 && ! is.read (ptmp, len)) |
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398 error ("load: failed to load string constant"); |
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399 |
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400 if (len > max_len) |
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401 { |
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402 max_len = len; |
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403 chm.resize (elements, max_len, 0); |
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404 } |
4687 | 405 |
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406 chm.insert (tmp, i, 0); |
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407 } |
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408 |
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409 matrix = chm; |
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410 } |
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411 else if (kw == "length") |
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412 { |
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413 int len = val; |
6151 | 414 |
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415 if (len >= 0) |
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416 { |
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417 // This is cruft for backward compatibility, |
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418 // but relatively harmless. |
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419 |
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420 // Use this instead of a C-style character buffer so |
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421 // that we can properly handle embedded NUL characters. |
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422 charMatrix tmp (1, len); |
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423 char *ptmp = tmp.fortran_vec (); |
4805 | 424 |
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425 if (len > 0 && ! is.read (ptmp, len)) |
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426 error ("load: failed to load string constant"); |
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427 |
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428 if (! is) |
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429 error ("load: failed to load string constant"); |
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430 |
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431 matrix = tmp; |
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432 } |
5099 | 433 } |
434 else | |
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435 panic_impossible (); |
4687 | 436 |
437 return success; | |
438 } | |
439 | |
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440 bool |
4687 | 441 octave_char_matrix_str::save_binary (std::ostream& os, |
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442 bool& /* save_as_floats */) |
4687 | 443 { |
4805 | 444 dim_vector d = dims (); |
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445 if (d.length () < 1) |
4805 | 446 return false; |
447 | |
448 // Use negative value for ndims to differentiate with old format!! | |
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449 int32_t tmp = - d.length (); |
5760 | 450 os.write (reinterpret_cast<char *> (&tmp), 4); |
4805 | 451 for (int i=0; i < d.length (); i++) |
4687 | 452 { |
4805 | 453 tmp = d(i); |
5760 | 454 os.write (reinterpret_cast<char *> (&tmp), 4); |
4687 | 455 } |
4805 | 456 |
457 charNDArray m = char_array_value (); | |
458 os.write (m.fortran_vec (), d.numel ()); | |
4687 | 459 return true; |
460 } | |
461 | |
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462 bool |
4687 | 463 octave_char_matrix_str::load_binary (std::istream& is, bool swap, |
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464 oct_mach_info::float_format /* fmt */) |
4687 | 465 { |
5828 | 466 int32_t elements; |
5760 | 467 if (! is.read (reinterpret_cast<char *> (&elements), 4)) |
4687 | 468 return false; |
469 if (swap) | |
4944 | 470 swap_bytes<4> (&elements); |
4805 | 471 |
472 if (elements < 0) | |
4687 | 473 { |
5828 | 474 int32_t mdims = - elements; |
475 int32_t di; | |
4805 | 476 dim_vector dv; |
477 dv.resize (mdims); | |
478 | |
479 for (int i = 0; i < mdims; i++) | |
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480 { |
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481 if (! is.read (reinterpret_cast<char *> (&di), 4)) |
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482 return false; |
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483 if (swap) |
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484 swap_bytes<4> (&di); |
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485 dv(i) = di; |
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486 } |
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487 |
5157 | 488 // Convert an array with a single dimension to be a row vector. |
489 // Octave should never write files like this, other software | |
490 // might. | |
491 | |
492 if (mdims == 1) | |
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493 { |
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494 mdims = 2; |
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495 dv.resize (mdims); |
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496 dv(1) = dv(0); |
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497 dv(0) = 1; |
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498 } |
5157 | 499 |
4805 | 500 charNDArray m(dv); |
501 char *tmp = m.fortran_vec (); | |
502 is.read (tmp, dv.numel ()); | |
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503 |
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504 if (! is) |
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505 return false; |
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506 |
4805 | 507 matrix = m; |
508 } | |
509 else | |
510 { | |
511 charMatrix chm (elements, 0); | |
512 int max_len = 0; | |
513 for (int i = 0; i < elements; i++) | |
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514 { |
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515 int32_t len; |
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516 if (! is.read (reinterpret_cast<char *> (&len), 4)) |
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517 return false; |
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518 if (swap) |
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519 swap_bytes<4> (&len); |
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520 charMatrix btmp (1, len); |
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521 char *pbtmp = btmp.fortran_vec (); |
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522 if (! is.read (pbtmp, len)) |
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523 return false; |
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524 if (len > max_len) |
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525 { |
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526 max_len = len; |
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527 chm.resize (elements, max_len, 0); |
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528 } |
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529 chm.insert (btmp, i, 0); |
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530 } |
4805 | 531 matrix = chm; |
4687 | 532 } |
533 return true; | |
534 } | |
535 | |
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536 bool |
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537 octave_char_matrix_str::save_hdf5 (octave_hdf5_id loc_id, const char *name, |
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538 bool /* save_as_floats */) |
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539 { |
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540 bool retval = false; |
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541 |
4687 | 542 #if defined (HAVE_HDF5) |
4944 | 543 |
4837 | 544 dim_vector dv = dims (); |
545 int empty = save_hdf5_empty (loc_id, name, dv); | |
546 if (empty) | |
4805 | 547 return (empty > 0); |
4687 | 548 |
4837 | 549 int rank = dv.length (); |
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550 hid_t space_hid, data_hid; |
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551 space_hid = data_hid = -1; |
4805 | 552 charNDArray m = char_array_value (); |
553 | |
554 OCTAVE_LOCAL_BUFFER (hsize_t, hdims, rank); | |
4687 | 555 |
4805 | 556 // Octave uses column-major, while HDF5 uses row-major ordering |
557 for (int i = 0; i < rank; i++) | |
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558 hdims[i] = dv(rank-i-1); |
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559 |
4815 | 560 space_hid = H5Screate_simple (rank, hdims, 0); |
4805 | 561 if (space_hid < 0) |
562 return false; | |
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563 #if HAVE_HDF5_18 |
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564 data_hid = H5Dcreate (loc_id, name, H5T_NATIVE_CHAR, space_hid, |
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565 octave_H5P_DEFAULT, octave_H5P_DEFAULT, octave_H5P_DEFAULT); |
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566 #else |
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567 data_hid = H5Dcreate (loc_id, name, H5T_NATIVE_CHAR, space_hid, |
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568 octave_H5P_DEFAULT); |
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569 #endif |
4805 | 570 if (data_hid < 0) |
4687 | 571 { |
4805 | 572 H5Sclose (space_hid); |
4687 | 573 return false; |
574 } | |
575 | |
4837 | 576 OCTAVE_LOCAL_BUFFER (char, s, dv.numel ()); |
4687 | 577 |
4837 | 578 for (int i = 0; i < dv.numel (); ++i) |
4805 | 579 s[i] = m(i); |
4687 | 580 |
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581 retval = H5Dwrite (data_hid, H5T_NATIVE_CHAR, octave_H5S_ALL, octave_H5S_ALL, |
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582 octave_H5P_DEFAULT, s) >= 0; |
4687 | 583 |
584 H5Dclose (data_hid); | |
585 H5Sclose (space_hid); | |
4837 | 586 |
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587 #else |
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588 gripe_save ("hdf5"); |
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589 #endif |
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590 |
4687 | 591 return retval; |
592 } | |
593 | |
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594 bool |
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595 octave_char_matrix_str::load_hdf5 (octave_hdf5_id loc_id, const char *name) |
4687 | 596 { |
4837 | 597 bool retval = false; |
598 | |
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599 #if defined (HAVE_HDF5) |
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600 |
4805 | 601 dim_vector dv; |
602 int empty = load_hdf5_empty (loc_id, name, dv); | |
603 if (empty > 0) | |
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604 matrix.resize (dv); |
4837 | 605 if (empty) |
606 return (empty > 0); | |
4805 | 607 |
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608 #if HAVE_HDF5_18 |
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609 hid_t data_hid = H5Dopen (loc_id, name, octave_H5P_DEFAULT); |
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610 #else |
4687 | 611 hid_t data_hid = H5Dopen (loc_id, name); |
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ac69e6f4b33d
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parents:
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diff
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612 #endif |
4687 | 613 hid_t space_hid = H5Dget_space (data_hid); |
614 hsize_t rank = H5Sget_simple_extent_ndims (space_hid); | |
615 hid_t type_hid = H5Dget_type (data_hid); | |
4805 | 616 hid_t type_class_hid = H5Tget_class (type_hid); |
4687 | 617 |
4805 | 618 if (type_class_hid == H5T_INTEGER) |
4687 | 619 { |
4805 | 620 if (rank < 1) |
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621 { |
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622 H5Tclose (type_hid); |
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623 H5Sclose (space_hid); |
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624 H5Dclose (data_hid); |
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625 return false; |
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626 } |
4805 | 627 |
628 OCTAVE_LOCAL_BUFFER (hsize_t, hdims, rank); | |
629 OCTAVE_LOCAL_BUFFER (hsize_t, maxdims, rank); | |
630 | |
631 H5Sget_simple_extent_dims (space_hid, hdims, maxdims); | |
632 | |
633 // Octave uses column-major, while HDF5 uses row-major ordering | |
634 if (rank == 1) | |
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635 { |
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636 dv.resize (2); |
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637 dv(0) = 1; |
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638 dv(1) = hdims[0]; |
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639 } |
4687 | 640 else |
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641 { |
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642 dv.resize (rank); |
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643 for (hsize_t i = 0, j = rank - 1; i < rank; i++, j--) |
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644 dv(j) = hdims[i]; |
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645 } |
4805 | 646 |
647 charNDArray m (dv); | |
648 char *str = m.fortran_vec (); | |
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649 if (H5Dread (data_hid, H5T_NATIVE_CHAR, octave_H5S_ALL, octave_H5S_ALL, |
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650 octave_H5P_DEFAULT, str) >= 0) |
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651 { |
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652 retval = true; |
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653 matrix = m; |
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654 } |
4805 | 655 |
656 H5Tclose (type_hid); | |
657 H5Sclose (space_hid); | |
658 H5Dclose (data_hid); | |
659 return true; | |
660 } | |
661 else | |
662 { | |
20449
df4165dfc676
maint: Fix misspelled word compatibility in code comments.
Rik <rik@octave.org>
parents:
20447
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changeset
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663 // This is cruft for backward compatibility and easy data |
4805 | 664 // importation |
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Fix loading of string arrays from 3rd party hdf5 files (bug #38789)
Markus Appel <masolomaster3000@gmail.com>
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665 if (rank == 0) //FIXME: Does rank==0 even exist for strings in HDF5? |
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666 { |
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667 // a single string: |
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668 int slen = H5Tget_size (type_hid); |
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669 if (slen < 0) |
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670 { |
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671 H5Tclose (type_hid); |
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672 H5Sclose (space_hid); |
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673 H5Dclose (data_hid); |
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674 return false; |
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675 } |
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676 else |
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677 { |
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678 OCTAVE_LOCAL_BUFFER (char, s, slen); |
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679 // create datatype for (null-terminated) string |
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680 // to read into: |
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681 hid_t st_id = H5Tcopy (H5T_C_S1); |
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682 H5Tset_size (st_id, slen+1); |
21022
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683 if (H5Dread (data_hid, st_id, octave_H5S_ALL, |
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684 octave_H5S_ALL, octave_H5P_DEFAULT, s) < 0) |
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685 { |
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686 H5Tclose (st_id); |
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687 H5Tclose (type_hid); |
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688 H5Sclose (space_hid); |
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689 H5Dclose (data_hid); |
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690 return false; |
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691 } |
4687 | 692 |
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693 matrix = charMatrix (s); |
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diff
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|
694 |
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695 H5Tclose (st_id); |
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696 H5Tclose (type_hid); |
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697 H5Sclose (space_hid); |
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698 H5Dclose (data_hid); |
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699 return true; |
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700 } |
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701 } |
4805 | 702 else if (rank == 1) |
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|
703 { |
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|
704 // string vector |
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705 hsize_t elements, maxdim; |
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|
706 H5Sget_simple_extent_dims (space_hid, &elements, &maxdim); |
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707 int slen = H5Tget_size (type_hid); |
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708 if (slen < 0) |
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709 { |
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710 H5Tclose (type_hid); |
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711 H5Sclose (space_hid); |
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712 H5Dclose (data_hid); |
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713 return false; |
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714 } |
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715 else |
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716 { |
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717 // hdf5 string arrays store strings of all the |
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718 // same physical length (I think), which is |
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719 // slightly wasteful, but oh well. |
11586
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strip trailing whitespace from source files
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diff
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|
720 |
17643
d0a197b9962a
Fix loading of string arrays from 3rd party hdf5 files (bug #38789)
Markus Appel <masolomaster3000@gmail.com>
parents:
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diff
changeset
|
721 OCTAVE_LOCAL_BUFFER (char, s, elements * (slen+1)); |
4805 | 722 |
10315
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723 // create datatype for (null-terminated) string |
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724 // to read into: |
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725 hid_t st_id = H5Tcopy (H5T_C_S1); |
17643
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Fix loading of string arrays from 3rd party hdf5 files (bug #38789)
Markus Appel <masolomaster3000@gmail.com>
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changeset
|
726 H5Tset_size (st_id, slen+1); |
4805 | 727 |
21022
ebc439187d29
avoid old-style cast warnings from HDF5 macros used in C++ sources
John W. Eaton <jwe@octave.org>
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diff
changeset
|
728 if (H5Dread (data_hid, st_id, octave_H5S_ALL, |
ebc439187d29
avoid old-style cast warnings from HDF5 macros used in C++ sources
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|
729 octave_H5S_ALL, octave_H5P_DEFAULT, s) < 0) |
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730 { |
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731 H5Tclose (st_id); |
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732 H5Tclose (type_hid); |
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733 H5Sclose (space_hid); |
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734 H5Dclose (data_hid); |
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735 return false; |
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|
736 } |
4805 | 737 |
17643
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Fix loading of string arrays from 3rd party hdf5 files (bug #38789)
Markus Appel <masolomaster3000@gmail.com>
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738 charMatrix chm (elements, slen, ' '); |
10315
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739 for (hsize_t i = 0; i < elements; ++i) |
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740 { |
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Fix loading of string arrays from 3rd party hdf5 files (bug #38789)
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741 chm.insert (s + i*(slen+1), i, 0); |
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742 } |
4805 | 743 |
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744 matrix = chm; |
4805 | 745 |
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746 H5Tclose (st_id); |
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747 H5Tclose (type_hid); |
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748 H5Sclose (space_hid); |
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749 H5Dclose (data_hid); |
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|
750 return true; |
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751 } |
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752 } |
4805 | 753 else |
10315
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754 { |
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755 H5Tclose (type_hid); |
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756 H5Sclose (space_hid); |
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757 H5Dclose (data_hid); |
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|
758 return false; |
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|
759 } |
4687 | 760 } |
4837 | 761 |
19863
09ed6f7538dd
avoid needing to include hdf5 in public header files (bug #44370, #43180)
John W. Eaton <jwe@octave.org> and Mike Miller <mtmiller@ieee.org>
parents:
19697
diff
changeset
|
762 #else |
09ed6f7538dd
avoid needing to include hdf5 in public header files (bug #44370, #43180)
John W. Eaton <jwe@octave.org> and Mike Miller <mtmiller@ieee.org>
parents:
19697
diff
changeset
|
763 gripe_load ("hdf5"); |
09ed6f7538dd
avoid needing to include hdf5 in public header files (bug #44370, #43180)
John W. Eaton <jwe@octave.org> and Mike Miller <mtmiller@ieee.org>
parents:
19697
diff
changeset
|
764 #endif |
09ed6f7538dd
avoid needing to include hdf5 in public header files (bug #44370, #43180)
John W. Eaton <jwe@octave.org> and Mike Miller <mtmiller@ieee.org>
parents:
19697
diff
changeset
|
765 |
4837 | 766 return retval; |
4687 | 767 } |