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[nan] fix Makefile - when running -j same target is compiled simultaneously causing errors
author schloegl
date Fri, 03 Apr 2015 13:21:05 +0000
parents 22658fcb51e9
children 26be3bc7237c
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1 ####################################################
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2 # Copyright 2010, 2011,2012 Alois Schloegl
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3 # This is part of the NaN-toolbox - a statistics and machine learning toolbox for data with and without missing values.
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4 # http://pub.ist.ac.at/~schloegl/matlab/NaN/
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5 ####################################################
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6
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7 ### modify directories according to your needs
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8
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9 # Define non-default octave-version
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10 # Octave - global install (e.g. from debian package)
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11 # OCTAVE_VERSION=
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12 # Better alternative: define an OCTAVE_VERSION bash variable (or in .bashrc or .profile)
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13 # OCTAVE_VERSION=-3.6.3
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14
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15 # Matlab configuration
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16 #MATLABDIR = /usr/local/MATLAB/R2010b
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17 # comment the following line if you use MATLAB on 32-bit operating system
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18 MEX_OPTION += -largeArrayDims
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19
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20 # Mingw crosscompiler: available at http://www.nongnu.org/mingw-cross-env/
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21 CROSS = $(HOME)/src/mxe/usr/bin/i686-w64-mingw32.static-
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22 CROSS64 = $(HOME)/src/mxe/usr/bin/x86_64-w64-mingw32.static-
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23 # include directory for Win32-Matlab include
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24 W32MAT_INC = $(HOME)/bin/win32/Matlab/R2010b/extern/include/
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25 W64MAT_INC = $(HOME)/bin/win64/Matlab/R2010b/extern/include/
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26 # path to GNUMEX libraries, available from here http://sourceforge.net/projects/gnumex/
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27 GNUMEX = $(HOME)/bin/win32/gnumex
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28 GNUMEX64 = $(HOME)/bin/win64/gnumex
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29 # building gnumex64 was difficult, these hints were quite useful:
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30 # http://sourceforge.net/mailarchive/forum.php?thread_name=AANLkTinZvxgC9ezp2P3UCX_a7TAUYuVsp2U40MQUV6qr%40mail.gmail.com&forum_name=gnumex-users
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31 # Instead of building "mex shortpath.c" and "mex uigetpath.c", I used empty m-functions within argout=argin;
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32 ####################################################
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33
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34 CC = gcc
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35 CXX = g++
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36 CFLAGS = -fopenmp -Wall -Wextra -Wconversion -O2 -fPIC
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37 OCTMEX = mkoctfile$(OCTAVE_VERSION) --mex
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38 RM = rm
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39
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40 ifneq (Darwin,$(shell uname))
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41 CFLAGS += -fopenmp
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42 MEX_OPTION += -lgomp
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43 endif
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44
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45 MEX_OPTION += CC\#$(CXX) CXX\#$(CXX) CFLAGS\#"$(CFLAGS) " CXXFLAGS\#"$(CFLAGS) "
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46 MATMEX = $(MATLABDIR)/bin/mex $(MEX_OPTION)
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47
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48 PROGS = histo_mex.mex covm_mex.mex kth_element.mex sumskipnan_mex.mex str2array.mex train.mex svmtrain_mex.mex svmpredict_mex.mex xptopen.mex
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49
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50 ### per default only the mex-files for octave are built
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51 mex4o octave: $(PROGS)
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52
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53
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54 ### Matlab configuration - search for a matlab directory if not defined above
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55 ifeq (,$(MATLABDIR))
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56 ifneq (,$(shell ls -1 /usr/local/ |grep MATLAB))
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57 # use oldest, typically mex-files are compatible with newer Matlab versions
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58 MATLABDIR=/usr/local/MATLAB/$(shell ls -1rt /usr/local/MATLAB/ |grep "^R20*" |head -1)
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59 endif
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60 endif
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61
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62
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63 ### if MATLABDIR has been found or defined
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64 ifneq (,$(MATLABDIR))
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65 ifneq (,$(shell ls -1 $(MATLABDIR)/bin/mexext))
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66 MEX_EXT=$(shell $(MATLABDIR)/bin/mexext)
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67 mex4m matlab: $(patsubst %.mex, %.$(MEX_EXT), $(PROGS))
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68 endif
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69 endif
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70
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71
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72 mexw32 win32: $(patsubst %.mex, %.mexw32, $(PROGS))
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73 mexw64 win64: $(patsubst %.mex, %.mexw64, $(PROGS))
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74 all: octave win32 win64 mex4m
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75
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76 clean:
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77 -$(RM) *.o *.obj *.o64 core octave-core *.oct *~ *.mex*
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78
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79 #$(PROGS): Makefile
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80
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81 #########################################################
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82 # Octave, MATLAB on Linux
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83 #########################################################
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84 %.oct: %.cc
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85 mkoctfile$(OCTAVE_VERSION) "$<"
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86
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87 %.mex: %.cpp
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88 $(OCTMEX) "$<"
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89
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90 svm%_mex.mex: svm%_mex.cpp svm.o svm_model_octave.o
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91 env CC=$(CXX) $(OCTMEX) "$<" svm.o svm_model_octave.o
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92 svm%_mex.$(MEX_EXT): svm%_mex.cpp svm.o svm_model_matlab.o
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93 $(MATMEX) "$<" svm.o svm_model_matlab.o
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94
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95 %.$(MEX_EXT): %.cpp svm.o svm_model_matlab.o
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96 $(MATMEX) "$<" # svm.o svm_model_matlab.o
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97
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98 svm_model_octave.o: svm_model_matlab.c
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99 $(CC) $(CFLAGS) $(shell $(OCTMEX) -p INCFLAGS) -o svm_model_octave.o -c svm_model_matlab.c
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100
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101 svm_model_matlab.o: svm_model_matlab.c
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102 $(CC) $(CFLAGS) -I $(MATLABDIR)/extern/include -c svm_model_matlab.c
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103
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104 train.$(MEX_EXT) predict.$(MEX_EXT): train.c linear.h tron.o linear.o linear_model_matlab.c
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105 $(CC) $(CFLAGS) -I $(MATLABDIR)/extern/include -c linear_model_matlab.c
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106 $(MATMEX) -lblas train.c tron.o linear.o linear_model_matlab.o
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107 #$(MATMEX) -lblas predict.c tron.o linear.o linear_model_matlab.o
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108
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109 train.mex predict.mex: train.c linear.h tron.o linear.o linear_model_matlab.c
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110 env CC=$(CXX) $(OCTMEX) -lblas train.c tron.o linear.o linear_model_matlab.c
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111
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112 svm.o: svm.cpp svm.h
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113 $(CC) $(CFLAGS) -c svm.cpp
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114
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115 linear.o: linear.cpp linear.h
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116 $(CXX) $(CFLAGS) -c linear.cpp
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117
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118 tron.o: tron.cpp tron.h
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119 $(CXX) $(CFLAGS) -c tron.cpp
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120
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121
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122 #########################################################
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123 # MATLAB/WIN32
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124 #########################################################
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125 %.obj: %.cpp
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126 $(CROSS)$(CXX) -fopenmp -c -DMATLAB_MEX_FILE -x c++ -o "$@" -I$(W32MAT_INC) -O2 -DMX_COMPAT_32 "$<"
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127 %.obj: %.c
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128 $(CROSS)$(CXX) -fopenmp -c -DMATLAB_MEX_FILE -x c++ -o "$@" -I$(W32MAT_INC) -O2 -DMX_COMPAT_32 "$<"
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129
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130 train.mexw32 predict.mexw32: train.obj linear.obj linear_model_matlab.obj tron.obj
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131 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o "$@" -L$(GNUMEX) -s "$<" linear_model_matlab.obj linear.obj tron.obj -llibmx -llibmex -llibmat -lcholmod -lblas
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132
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133 svmpredict_mex.mexw32 : svmpredict_mex.obj svm.obj svm_model_matlab.obj
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134 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o "$@" -L$(GNUMEX) -s "$<" svm_model_matlab.obj svm.obj -llibmx -llibmex -llibmat -lcholmod
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135 svmtrain_mex.mexw32 : svmtrain_mex.obj svm.obj svm_model_matlab.obj
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136 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o "$@" -L$(GNUMEX) -s "$<" svm_model_matlab.obj svm.obj -llibmx -llibmex -llibmat -lcholmod
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138 %.mexw32: %.obj
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139 $(CROSS)$(CXX) -shared $(GNUMEX)/mex.def -o "$@" -L$(GNUMEX) -s "$<" -llibmx -llibmex -llibmat -lcholmod -lgomp -lpthread
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140
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141
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142
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143 #########################################################
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144 # MATLAB/WIN64
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145 #########################################################
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146
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147 ## ToDO: fix OpenMP support: currently -fopenmp causes Matlab to crash
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148 %.o64: %.cpp
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149 $(CROSS64)$(CXX) -c -DMATLAB_MEX_FILE -x c++ -o "$@" -I$(W64MAT_INC) -O2 "$<"
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150 %.o64: %.c
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151 $(CROSS64)$(CXX) -c -DMATLAB_MEX_FILE -x c++ -o "$@" -I$(W64MAT_INC) -O2 "$<"
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152
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153 train.mexw64 predict.mexw64: train.o64 linear.o64 linear_model_matlab.o64 tron.o64
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154 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o "$@" -L$(GNUMEX64) -s "$<" linear_model_matlab.o64 linear.o64 tron.o64 -llibmx -llibmex -llibmat -lcholmod -lblas
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155
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156 svmpredict_mex.mexw64 : svmpredict_mex.o64 svm.o64 svm_model_matlab.o64
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157 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o "$@" -L$(GNUMEX64) -s "$<" svm_model_matlab.o64 svm.o64 -llibmx -llibmex -llibmat -lcholmod
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158 svmtrain_mex.mexw64 : svmtrain_mex.o64 svm.o64 svm_model_matlab.o64
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159 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o "$@" -L$(GNUMEX64) -s "$<" svm_model_matlab.o64 svm.o64 -llibmx -llibmex -llibmat -lcholmod
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160
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161 %.mexw64: %.o64
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162 $(CROSS64)$(CXX) -shared $(GNUMEX64)/mex.def -o "$@" -L$(GNUMEX64) -s "$<" -llibmx -llibmex -llibmat -lcholmod -lgomp -lpthread
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