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annotate scripts/sparse/bicgstab.m @ 20164:df437a52bcaf stable

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doc: Update more docstrings to have one sentence summary as first line. Reviewed miscellaneous, sparse, strings in scripts directory. * scripts/miscellaneous/bzip2.m, scripts/miscellaneous/citation.m, scripts/miscellaneous/compare_versions.m, scripts/miscellaneous/computer.m, scripts/miscellaneous/debug.m, scripts/miscellaneous/dir.m, scripts/miscellaneous/edit.m, scripts/miscellaneous/error_ids.m, scripts/miscellaneous/fileattrib.m, scripts/miscellaneous/fullfile.m, scripts/miscellaneous/genvarname.m, scripts/miscellaneous/gzip.m, scripts/miscellaneous/mkoctfile.m, scripts/miscellaneous/news.m, scripts/miscellaneous/open.m, scripts/miscellaneous/parseparams.m, scripts/miscellaneous/recycle.m, scripts/miscellaneous/run.m, scripts/miscellaneous/swapbytes.m, scripts/miscellaneous/tar.m, scripts/miscellaneous/tmpnam.m, scripts/miscellaneous/unpack.m, scripts/miscellaneous/what.m, scripts/sparse/bicg.m, scripts/sparse/bicgstab.m, scripts/sparse/cgs.m, scripts/sparse/colperm.m, scripts/sparse/eigs.m, scripts/sparse/etreeplot.m, scripts/sparse/gmres.m, scripts/sparse/gplot.m, scripts/sparse/ichol.m, scripts/sparse/ilu.m, scripts/sparse/pcg.m, scripts/sparse/pcr.m, scripts/sparse/qmr.m, scripts/sparse/spaugment.m, scripts/sparse/spconvert.m, scripts/sparse/spdiags.m, scripts/sparse/spfun.m, scripts/sparse/spones.m, scripts/sparse/sprandsym.m, scripts/sparse/spstats.m, scripts/sparse/spy.m, scripts/sparse/svds.m, scripts/sparse/treelayout.m, scripts/sparse/treeplot.m, scripts/strings/base2dec.m, scripts/strings/bin2dec.m, scripts/strings/blanks.m, scripts/strings/cstrcat.m, scripts/strings/deblank.m, scripts/strings/dec2base.m, scripts/strings/dec2bin.m, scripts/strings/dec2hex.m, scripts/strings/findstr.m, scripts/strings/hex2dec.m, scripts/strings/index.m, scripts/strings/isletter.m, scripts/strings/isstrprop.m, scripts/strings/mat2str.m, scripts/strings/ostrsplit.m, scripts/strings/regexptranslate.m, scripts/strings/rindex.m, scripts/strings/str2num.m, scripts/strings/strcat.m, scripts/strings/strchr.m, scripts/strings/strjoin.m, scripts/strings/strjust.m, scripts/strings/strmatch.m, scripts/strings/strsplit.m, scripts/strings/strtok.m, scripts/strings/strtrim.m, scripts/strings/strtrunc.m, scripts/strings/substr.m, scripts/strings/untabify.m, scripts/time/datenum.m: Update more docstrings to have one sentence summary as first line.
author Rik <rik@octave.org>
date Mon, 04 May 2015 14:22:02 -0700
parents 0a3ca546d7fc
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 ## Copyright (C) 2008-2015 Radek Salac
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2 ## Copyright (C) 2012 Carlo de Falco
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3 ##
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4 ## This file is part of Octave.
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5 ##
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6 ## Octave is free software; you can redistribute it and/or modify it
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7 ## under the terms of the GNU General Public License as published by
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8 ## the Free Software Foundation; either version 3 of the License, or (at
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9 ## your option) any later version.
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10 ##
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11 ## Octave is distributed in the hope that it will be useful, but
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12 ## WITHOUT ANY WARRANTY; without even the implied warranty of
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13 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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14 ## General Public License for more details.
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15 ##
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16 ## You should have received a copy of the GNU General Public License
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17 ## along with Octave; see the file COPYING. If not, see
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18 ## <http://www.gnu.org/licenses/>.
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19
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20 ## -*- texinfo -*-
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21 ## @deftypefn {Function File} {@var{x} =} bicgstab (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{M1}, @var{M2}, @var{x0})
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22 ## @deftypefnx {Function File} {@var{x} =} bicgstab (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{P})
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23 ## @deftypefnx {Function File} {[@var{x}, @var{flag}, @var{relres}, @var{iter}, @var{resvec}] =} bicgstab (@var{A}, @var{b}, @dots{})
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24 ## Solve @code{A x = b} using the stabilizied Bi-conjugate gradient iterative
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25 ## method.
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26 ##
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27 ## @itemize @minus
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28 ## @item @var{rtol} is the relative tolerance, if not given or set to [] the
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29 ## default value 1e-6 is used.
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30 ##
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31 ## @item @var{maxit} the maximum number of outer iterations, if not given or
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32 ## set to [] the default value @code{min (20, numel (b))} is used.
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33 ##
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34 ## @item @var{x0} the initial guess, if not given or set to [] the default
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35 ## value @code{zeros (size (b))} is used.
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36 ## @end itemize
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37 ##
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38 ## @var{A} can be passed as a matrix or as a function handle or inline
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39 ## function @code{f} such that @code{f(x) = A*x}.
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40 ##
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41 ## The preconditioner @var{P} is given as @code{P = M1 * M2}. Both @var{M1}
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42 ## and @var{M2} can be passed as a matrix or as a function handle or inline
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43 ## function @code{g} such that @code{g(x) = M1 \ x} or @code{g(x) = M2 \ x}.
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44 ##
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45 ## If called with more than one output parameter
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46 ##
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47 ## @itemize @minus
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48 ## @item @var{flag} indicates the exit status:
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49 ##
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50 ## @itemize @minus
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51 ## @item 0: iteration converged to the within the chosen tolerance
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52 ##
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53 ## @item 1: the maximum number of iterations was reached before convergence
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54 ##
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55 ## @item 3: the algorithm reached stagnation
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56 ## @end itemize
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57 ##
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58 ## (the value 2 is unused but skipped for compatibility).
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59 ##
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60 ## @item @var{relres} is the final value of the relative residual.
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61 ##
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62 ## @item @var{iter} is the number of iterations performed.
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63 ##
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64 ## @item @var{resvec} is a vector containing the relative residual at each
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65 ## iteration.
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66 ## @end itemize
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67 ##
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68 ## @seealso{bicg, cgs, gmres, pcg, qmr}
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69 ##
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70 ## @end deftypefn
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71
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72 function [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, maxit,
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73 M1, M2, x0)
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74
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75 if (nargin >= 2 && nargin <= 7 && isvector (full (b)))
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76
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77 if (ischar (A))
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78 A = str2func (A);
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79 elseif (isnumeric(A) && ismatrix (A))
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80 Ax = @(x) A * x;
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81 elseif (isa (A, "function_handle"))
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82 Ax = @(x) feval (A, x);
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83 else
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84 error (["bicgstab: first argument is expected " ...
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85 "to be a function or a square matrix"]);
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86 endif
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87
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88 if (nargin < 3 || isempty (tol))
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89 tol = 1e-6;
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90 endif
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91
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92 if (nargin < 4 || isempty (maxit))
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93 maxit = min (rows (b), 20);
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94 endif
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95
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96 if (nargin < 5 || isempty (M1))
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97 M1m1x = @(x) x;
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98 elseif (ischar (M1))
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99 M1m1x = str2func (M1);
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100 elseif (isnumeric(M1) && ismatrix (M1))
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101 M1m1x = @(x) M1 \ x;
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102 elseif (isa (M1, "function_handle"))
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103 M1m1x = @(x) feval (M1, x);
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104 else
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105 error (["bicgstab: preconditioner is " ...
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106 "expected to be a function or matrix"]);
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107 endif
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108
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109 if (nargin < 6 || isempty (M2))
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110 M2m1x = @(x) x;
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111 elseif (ischar (M2))
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112 M2m1x = str2func (M2);
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113 elseif (isnumeric(M2) && ismatrix (M2))
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114 M2m1x = @(x) M2 \ x;
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115 elseif (isa (M2, "function_handle"))
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e5aaba072d2b maint: style fixes in iterative linear solvers
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parents: 13070
diff changeset
116 M2m1x = @(x) feval (M2, x);
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117 else
13061
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diff changeset
118 error (["bicgstab: preconditioner is "...
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parents: 11587
diff changeset
119 "expected to be a function or matrix"]);
9279
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Jaroslav Hajek <highegg@gmail.com>
parents: 9278
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120 endif
8416
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parents:
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121
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Carlo de Falco <kingcrimson@tiscali.it>
parents: 13070
diff changeset
122 precon = @(x) M2m1x (M1m1x (x));
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parents:
diff changeset
123
13091
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Carlo de Falco <kingcrimson@tiscali.it>
parents: 13070
diff changeset
124 if (nargin < 7 || isempty (x0))
13061
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125 x0 = zeros (size (b));
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diff changeset
126 endif
13141
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John W. Eaton <jwe@octave.org>
parents: 13091
diff changeset
127
13061
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diff changeset
128 ## specifies initial estimate x0
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diff changeset
129 if (nargin < 7)
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130 x = zeros (rows (b), 1);
8416
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parents:
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131 else
13061
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132 x = x0;
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133 endif
0a56e5c21c29 Add the bicgstab function
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parents:
diff changeset
134
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diff changeset
135 norm_b = norm (b);
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diff changeset
136
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diff changeset
137 res = b - Ax (x);
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diff changeset
138 rr = res;
8416
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parents:
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139
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diff changeset
140 ## Vector of the residual norms for each iteration.
14868
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parents: 14853
diff changeset
141 resvec = norm (res) / norm_b;
8416
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parents:
diff changeset
142
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143 ## Default behaviour we don't reach tolerance tol within maxit iterations.
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144 flag = 1;
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diff changeset
145
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diff changeset
146 for iter = 1:maxit
17422
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
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147 rho_1 = rr' * res;
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parents:
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148
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149 if (iter == 1)
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diff changeset
150 p = res;
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diff changeset
151 else
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diff changeset
152 beta = (rho_1 / rho_2) * (alpha / omega);
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diff changeset
153 p = res + beta * (p - omega * v);
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diff changeset
154 endif
addfc0ae69c0 Make bicgstab interface more compatible
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parents: 11587
diff changeset
155
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parents: 11587
diff changeset
156 phat = precon (p);
8416
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parents:
diff changeset
157
13061
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diff changeset
158 v = Ax (phat);
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diff changeset
159 alpha = rho_1 / (rr' * v);
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diff changeset
160 s = res - alpha * v;
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parents: 11587
diff changeset
161
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diff changeset
162 shat = precon (s);
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parents: 11587
diff changeset
163
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parents: 11587
diff changeset
164 t = Ax (shat);
17422
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
165 omega = (s' * t) / (t' * t);
13061
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diff changeset
166 x = x + alpha * phat + omega * shat;
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diff changeset
167 res = s - omega * t;
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diff changeset
168 rho_2 = rho_1;
8416
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parents:
diff changeset
169
13061
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170 relres = norm (res) / norm_b;
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diff changeset
171 resvec = [resvec; relres];
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diff changeset
172
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diff changeset
173 if (relres <= tol)
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diff changeset
174 ## We reach tolerance tol within maxit iterations.
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diff changeset
175 flag = 0;
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diff changeset
176 break;
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parents: 11587
diff changeset
177 elseif (resvec(end) == resvec(end - 1))
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diff changeset
178 ## The method stagnates.
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diff changeset
179 flag = 3;
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diff changeset
180 break;
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parents: 11587
diff changeset
181 endif
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parents: 11587
diff changeset
182 endfor
8416
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parents:
diff changeset
183
13061
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diff changeset
184 if (nargout < 2)
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diff changeset
185 if (flag == 0)
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diff changeset
186 printf ("bicgstab converged at iteration %i ", iter);
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diff changeset
187 printf ("to a solution with relative residual %e\n", relres);
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diff changeset
188 elseif (flag == 3)
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parents: 11587
diff changeset
189 printf ("bicgstab stopped at iteration %i ", iter);
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diff changeset
190 printf ("without converging to the desired tolerance %e\n", tol);
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parents: 11587
diff changeset
191 printf ("because the method stagnated.\n");
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diff changeset
192 printf ("The iterate returned (number %i) ", iter);
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diff changeset
193 printf ("has relative residual %e\n", relres);
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parents: 11587
diff changeset
194 else
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parents: 11587
diff changeset
195 printf ("bicgstab stopped at iteration %i ", iter);
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diff changeset
196 printf ("without converging to the desired toleranc %e\n", tol);
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diff changeset
197 printf ("because the maximum number of iterations was reached.\n");
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diff changeset
198 printf ("The iterate returned (number %i) ", iter);
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Carlo de Falco <kingcrimson@tiscali.it>
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diff changeset
199 printf ("has relative residual %e\n", relres);
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diff changeset
200 endif
9278
2b35cb600d50 improve bicgstab and cgs
Radek Salac <salac.r@gmail.com>
parents: 8920
diff changeset
201 endif
13061
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diff changeset
202
addfc0ae69c0 Make bicgstab interface more compatible
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parents: 11587
diff changeset
203 else
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parents: 11587
diff changeset
204 print_usage ();
9278
2b35cb600d50 improve bicgstab and cgs
Radek Salac <salac.r@gmail.com>
parents: 8920
diff changeset
205 endif
2b35cb600d50 improve bicgstab and cgs
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parents: 8920
diff changeset
206
8416
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parents:
diff changeset
207 endfunction
0a56e5c21c29 Add the bicgstab function
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parents:
diff changeset
208
14237
11949c9795a0 Revamp %!demos in m-files to use Octave coding conventions on spacing, etc.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
209
8416
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parents:
diff changeset
210 %!demo
0a56e5c21c29 Add the bicgstab function
Radek Salac <salac.r@gmail.com>
parents:
diff changeset
211 %! % Solve system of A*x=b
14237
11949c9795a0 Revamp %!demos in m-files to use Octave coding conventions on spacing, etc.
Rik <octave@nomad.inbox5.com>
parents: 14138
diff changeset
212 %! A = [5 -1 3;-1 2 -2;3 -2 3];
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213 %! b = [7;-1;4];
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parents: 14138
diff changeset
214 %! [x, flag, relres, iter, resvec] = bicgstab (A, b)
8416
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parents:
diff changeset
215
13061
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diff changeset
216 %!shared A, b, n, M1, M2
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diff changeset
217 %!
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diff changeset
218 %!test
13141
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diff changeset
219 %! n = 100;
13061
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diff changeset
220 %! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n);
13141
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diff changeset
221 %! b = sum (A, 2);
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diff changeset
222 %! tol = 1e-8;
13061
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diff changeset
223 %! maxit = 15;
13141
e81ddf9cacd5 maint: untabify and remove trailing whitespace from source files
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parents: 13091
diff changeset
224 %! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n);
e81ddf9cacd5 maint: untabify and remove trailing whitespace from source files
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diff changeset
225 %! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n);
13061
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diff changeset
226 %! [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, maxit, M1, M2);
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diff changeset
227 %! assert (x, ones (size (b)), 1e-7);
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diff changeset
228 %!
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diff changeset
229 %!test
13837
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parents: 13141
diff changeset
230 %!function y = afun (x, a)
2c80bbd87f5d don't define functions in test and demo blocks
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diff changeset
231 %! y = a * x;
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diff changeset
232 %!endfunction
2c80bbd87f5d don't define functions in test and demo blocks
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diff changeset
233 %!
13141
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diff changeset
234 %! tol = 1e-8;
13061
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diff changeset
235 %! maxit = 15;
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diff changeset
236 %!
13141
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diff changeset
237 %! [x, flag, relres, iter, resvec] = bicgstab (@(x) afun (x, A), b,
13061
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diff changeset
238 %! tol, maxit, M1, M2);
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diff changeset
239 %! assert (x, ones (size (b)), 1e-7);
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Carlo de Falco <kingcrimson@tiscali.it>
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diff changeset
240
addfc0ae69c0 Make bicgstab interface more compatible
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diff changeset
241 %!test
13141
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diff changeset
242 %! n = 100;
e81ddf9cacd5 maint: untabify and remove trailing whitespace from source files
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diff changeset
243 %! tol = 1e-8;
13061
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diff changeset
244 %! a = sprand (n, n, .1);
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diff changeset
245 %! A = a'*a + 100 * eye (n);
13141
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diff changeset
246 %! b = sum (A, 2);
13061
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diff changeset
247 %! [x, flag, relres, iter, resvec] = bicgstab (A, b, tol, [], diag (diag (A)));
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diff changeset
248 %! assert (x, ones (size (b)), 1e-7);
14363
f3d52523cde1 Use Octave coding conventions in all m-file %!test blocks
Rik <octave@nomad.inbox5.com>
parents: 14237
diff changeset
249
17422
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Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
250 %!test
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
251 %! A = [1 + 1i, 1 + 1i; 2 - 1i, 2 + 1i];
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
252 %! b = A * [1; 1];
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
253 %! [x, flag, relres, iter, resvec] = bicgstab (A, b);
7ad3b9ca66f5 fix behaviour of bicgstab for complex matrices (bug #40017)
Marco Caliari <marco.caliari@univr.it>
parents: 16816
diff changeset
254 %! assert (x, [1; 1], 1e-6);