Mercurial > octave
annotate scripts/statistics/base/skewness.m @ 21309:7fbecef105ca
Allow statistics functions to work over non-existent dimension (bug #33523).
* var.m, center.m, kurtosis.m, mean.m, meansq.m, median.m, moment.m,
skewness.m, std.m: Remove check for input dimension being within the range
of ndims (x). Add BIST tests for new behavior and update input validation
tests.
author | Rik <rik@octave.org> |
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date | Fri, 19 Feb 2016 21:27:03 -0800 |
parents | c53bfd6d8e08 |
children | bac0d6f07a3e |
rev | line source |
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1 ## Copyright (C) 2013-2015 Julien Bect |
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2 ## Copyright (C) 1996-2015 John W. Eaton |
3200 | 3 ## |
4 ## This file is part of Octave. | |
5 ## | |
6 ## Octave is free software; you can redistribute it and/or modify it | |
7 ## under the terms of the GNU General Public License as published by | |
7016 | 8 ## the Free Software Foundation; either version 3 of the License, or (at |
9 ## your option) any later version. | |
3200 | 10 ## |
11 ## Octave is distributed in the hope that it will be useful, but | |
12 ## WITHOUT ANY WARRANTY; without even the implied warranty of | |
13 ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
14 ## General Public License for more details. | |
15 ## | |
16 ## You should have received a copy of the GNU General Public License | |
7016 | 17 ## along with Octave; see the file COPYING. If not, see |
18 ## <http://www.gnu.org/licenses/>. | |
3200 | 19 |
3367 | 20 ## -*- texinfo -*- |
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21 ## @deftypefn {} {} skewness (@var{x}) |
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22 ## @deftypefnx {} {} skewness (@var{x}, @var{flag}) |
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23 ## @deftypefnx {} {} skewness (@var{x}, @var{flag}, @var{dim}) |
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24 ## Compute the sample skewness of the elements of @var{x}. |
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25 ## |
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26 ## The sample skewness is defined as |
3367 | 27 ## @tex |
28 ## $$ | |
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29 ## {\rm skewness} (@var{x}) = {{{1\over N}\, |
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30 ## \sum_{i=1}^N (@var{x}_i - \bar{@var{x}})^3} \over \sigma^3}, |
3367 | 31 ## $$ |
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32 ## where $N$ is the length of @var{x}, $\bar{@var{x}}$ its mean and $\sigma$ |
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33 ## its (uncorrected) standard deviation. |
3367 | 34 ## @end tex |
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35 ## @ifnottex |
3426 | 36 ## |
3367 | 37 ## @example |
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38 ## @group |
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39 ## mean ((@var{x} - mean (@var{x})).^3) |
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40 ## skewness (@var{X}) = ------------------------. |
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41 ## std (@var{x}).^3 |
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42 ## @end group |
3367 | 43 ## @end example |
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44 ## |
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45 ## @end ifnottex |
3426 | 46 ## |
3367 | 47 ## @noindent |
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48 ## The optional argument @var{flag} controls which normalization is used. |
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49 ## If @var{flag} is equal to 1 (default value, used when @var{flag} is omitted |
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50 ## or empty), return the sample skewness as defined above. If @var{flag} is |
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51 ## equal to 0, return the adjusted skewness coefficient instead: |
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52 ## @tex |
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53 ## $$ |
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54 ## {\rm skewness} (@var{x}) = {\sqrt{N (N - 1)} \over N - 2} \times \, |
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55 ## {{{1 \over N} \sum_{i=1}^N (@var{x}_i - \bar{@var{x}})^3} \over \sigma^3} |
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56 ## $$ |
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57 ## @end tex |
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58 ## @ifnottex |
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59 ## |
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60 ## @example |
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61 ## @group |
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62 ## sqrt (N*(N-1)) mean ((@var{x} - mean (@var{x})).^3) |
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63 ## skewness (@var{X}, 0) = -------------- * ------------------------. |
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64 ## (N - 2) std (@var{x}).^3 |
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65 ## @end group |
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66 ## @end example |
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67 ## |
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68 ## @end ifnottex |
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69 ## The adjusted skewness coefficient is obtained by replacing the sample second |
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70 ## and third central moments by their bias-corrected versions. |
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71 ## |
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72 ## If @var{x} is a matrix, or more generally a multi-dimensional array, return |
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73 ## the skewness along the first non-singleton dimension. If the optional |
4885 | 74 ## @var{dim} argument is given, operate along this dimension. |
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75 ## |
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76 ## @seealso{var, kurtosis, moment} |
3367 | 77 ## @end deftypefn |
3200 | 78 |
5428 | 79 ## Author: KH <Kurt.Hornik@wu-wien.ac.at> |
3200 | 80 ## Created: 29 July 1994 |
81 ## Adapted-By: jwe | |
82 | |
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83 function y = skewness (x, flag, dim) |
3200 | 84 |
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85 if (nargin < 1) || (nargin > 3) |
6046 | 86 print_usage (); |
3200 | 87 endif |
88 | |
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89 if (! (isnumeric (x) || islogical (x))) |
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90 error ("skewness: X must be a numeric vector or matrix"); |
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91 endif |
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92 |
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93 if (nargin < 2 || isempty (flag)) |
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94 flag = 1; # default: do not use the "bias corrected" version |
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95 elseif (! isscalar (flag) || (flag != 0 && flag != 1)) |
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96 error ("skewness: FLAG must be 0 or 1"); |
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97 endif |
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98 |
4885 | 99 nd = ndims (x); |
100 sz = size (x); | |
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101 if (nargin < 3) |
4886 | 102 ## Find the first non-singleton dimension. |
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103 (dim = find (sz > 1, 1)) || (dim = 1); |
3200 | 104 else |
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105 if (! (isscalar (dim) && dim == fix (dim) && dim > 0)) |
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106 error ("skewness: DIM must be an integer and a valid dimension"); |
4885 | 107 endif |
108 endif | |
109 | |
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110 n = size (x, dim); |
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112 |
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113 x = center (x, dim); # center also promotes integer, logical to double |
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114 s = std (x, 1, dim); # Normalize with 1/N |
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115 y = sum (x .^ 3, dim); |
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116 idx = (s != 0); |
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117 y(idx) ./= (n * s(idx) .^ 3); |
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118 y(! idx) = NaN; |
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119 |
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120 ## Apply bias correction to the second and third central sample moment |
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121 if (flag == 0) |
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122 if (n > 2) |
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123 y *= sqrt (n * (n - 1)) / (n - 2); |
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124 else |
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125 y(:) = NaN; |
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126 endif |
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127 endif |
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128 |
3200 | 129 endfunction |
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131 |
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132 %!assert (skewness ([-1, 0, 1]), 0) |
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133 %!assert (skewness ([-2, 0, 1]) < 0) |
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134 %!assert (skewness ([-1, 0, 2]) > 0) |
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135 %!assert (skewness ([-3, 0, 1]) == -1 * skewness ([-1, 0, 3])) |
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136 %!assert (skewness (ones (3, 5)), NaN (1, 5)) |
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137 %!assert (skewness (1, [], 3), NaN) |
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138 |
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139 %!test |
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140 %! x = [0; 0; 0; 1]; |
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141 %! y = [x, 2*x]; |
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142 %! assert (skewness (y), 1.154700538379251 * [1 1], 5*eps); |
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144 %!assert (skewness ([1:5 10; 1:5 10], 0, 2), 1.439590274527954 * [1; 1], eps) |
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145 %!assert (skewness ([1:5 10; 1:5 10], 1, 2), 1.051328089232020 * [1; 1], 2*eps) |
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146 %!assert (skewness ([1:5 10; 1:5 10], [], 2), 1.051328089232020 * [1; 1], 2*eps) |
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148 ## Test behavior on single input |
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149 %!assert (skewness (single ([1:5 10])), single (1.0513283), eps ("single")) |
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150 %!assert (skewness (single ([1 2]), 0), single (NaN)) |
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152 ## Verify no "divide-by-zero" warnings |
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153 %!test |
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154 %! warning ("on", "Octave:divide-by-zero", "local"); |
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155 %! lastwarn (""); # clear last warning |
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156 %! skewness (1); |
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157 %! assert (lastwarn (), ""); |
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158 |
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159 ## Test input validation |
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160 %!error skewness () |
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161 %!error skewness (1, 2, 3) |
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162 %!error <X must be a numeric vector or matrix> skewness (['A'; 'B']) |
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163 %!error <FLAG must be 0 or 1> skewness (1, 2) |
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164 %!error <FLAG must be 0 or 1> skewness (1, [1 0]) |
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165 %!error <DIM must be an integer> skewness (1, [], ones (2,2)) |
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166 %!error <DIM must be an integer> skewness (1, [], 1.5) |
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167 %!error <DIM must be .* a valid dimension> skewness (1, [], 0) |
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168 |